The complete chloroplast genome sequence of Ficus beipeiensis (Moraceae), an endemic and endangered plant in China
Ficus beipeiensis S.S.Chang is an evergreen plant of Ficus from the family Moraceae. This is an endangered species endemic to China. In terms of economic value, F. beipeiensis are used as a native plant resource of urban landscaping in Chongqing, China. Here, we sequenced, assembled and annotated th...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-02-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1861556 |
| _version_ | 1797639046742147072 |
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| author | Fang Han Jingling Li Jing Yuan Jie Yu |
| author_facet | Fang Han Jingling Li Jing Yuan Jie Yu |
| author_sort | Fang Han |
| collection | DOAJ |
| description | Ficus beipeiensis S.S.Chang is an evergreen plant of Ficus from the family Moraceae. This is an endangered species endemic to China. In terms of economic value, F. beipeiensis are used as a native plant resource of urban landscaping in Chongqing, China. Here, we sequenced, assembled and annotated the chloroplast (cp) genome of F. beipeiensis, and aim to provide genetic resources for this endangered species. The length of cp genome was 160,595 bp, with a large single-copy region (LSC) of 88,683 bp and a small single-copy region (SSC) of 20,160 bp separated by a pair of inverted repeats (IRs) of 25,876 bp. It encodes 110 unique genes, including 76 protein-coding genes, 30 transfer RNA genes, and 4 ribosomal RNA genes. Besides, we reconstructed the phylogeny of Moraceae based on the whole cp genome sequences data set. Phylogenetic analysis shows that all analyzed Ficus species are clustered and form a monophyletic group. Antiaris is a sister group to Ficus. In our maximum likelihood (ML) tree, F. beipeiensis is closely related to F. racemose. |
| first_indexed | 2024-03-11T13:11:13Z |
| format | Article |
| id | doaj.art-fe097501bd5e48bcaeb766f160e5ede9 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:11:13Z |
| publishDate | 2021-02-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-fe097501bd5e48bcaeb766f160e5ede92023-11-03T14:08:18ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-02-016260460510.1080/23802359.2020.18615561861556The complete chloroplast genome sequence of Ficus beipeiensis (Moraceae), an endemic and endangered plant in ChinaFang Han0Jingling Li1Jing Yuan2Jie Yu3College of Horticulture and Landscape Architecture, Southwest UniversityCollege of Horticulture and Landscape Architecture, Southwest UniversityCollege of Horticulture and Landscape Architecture, Southwest UniversityCollege of Horticulture and Landscape Architecture, Southwest UniversityFicus beipeiensis S.S.Chang is an evergreen plant of Ficus from the family Moraceae. This is an endangered species endemic to China. In terms of economic value, F. beipeiensis are used as a native plant resource of urban landscaping in Chongqing, China. Here, we sequenced, assembled and annotated the chloroplast (cp) genome of F. beipeiensis, and aim to provide genetic resources for this endangered species. The length of cp genome was 160,595 bp, with a large single-copy region (LSC) of 88,683 bp and a small single-copy region (SSC) of 20,160 bp separated by a pair of inverted repeats (IRs) of 25,876 bp. It encodes 110 unique genes, including 76 protein-coding genes, 30 transfer RNA genes, and 4 ribosomal RNA genes. Besides, we reconstructed the phylogeny of Moraceae based on the whole cp genome sequences data set. Phylogenetic analysis shows that all analyzed Ficus species are clustered and form a monophyletic group. Antiaris is a sister group to Ficus. In our maximum likelihood (ML) tree, F. beipeiensis is closely related to F. racemose.http://dx.doi.org/10.1080/23802359.2020.1861556ficus beipeiensischloroplast genomephylogenetic analysisendangeredendemic plant |
| spellingShingle | Fang Han Jingling Li Jing Yuan Jie Yu The complete chloroplast genome sequence of Ficus beipeiensis (Moraceae), an endemic and endangered plant in China Mitochondrial DNA. Part B. Resources ficus beipeiensis chloroplast genome phylogenetic analysis endangered endemic plant |
| title | The complete chloroplast genome sequence of Ficus beipeiensis (Moraceae), an endemic and endangered plant in China |
| title_full | The complete chloroplast genome sequence of Ficus beipeiensis (Moraceae), an endemic and endangered plant in China |
| title_fullStr | The complete chloroplast genome sequence of Ficus beipeiensis (Moraceae), an endemic and endangered plant in China |
| title_full_unstemmed | The complete chloroplast genome sequence of Ficus beipeiensis (Moraceae), an endemic and endangered plant in China |
| title_short | The complete chloroplast genome sequence of Ficus beipeiensis (Moraceae), an endemic and endangered plant in China |
| title_sort | complete chloroplast genome sequence of ficus beipeiensis moraceae an endemic and endangered plant in china |
| topic | ficus beipeiensis chloroplast genome phylogenetic analysis endangered endemic plant |
| url | http://dx.doi.org/10.1080/23802359.2020.1861556 |
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