Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae)
In this study, we report the complete chloroplast (cp) genome of Phtheirospermum japonicum was determined through Illumina sequencing method. The complete chloroplast genome of Ph. japonicum was 153,397 bp in length and contained a pair of IR regions (25,601 bp) separated by a small single copy regi...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1673254 |
| _version_ | 1797639684491313152 |
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| author | Yong-Chao Li Xin-Liang Zhao Jing Yang Qing-Yun Fu |
| author_facet | Yong-Chao Li Xin-Liang Zhao Jing Yang Qing-Yun Fu |
| author_sort | Yong-Chao Li |
| collection | DOAJ |
| description | In this study, we report the complete chloroplast (cp) genome of Phtheirospermum japonicum was determined through Illumina sequencing method. The complete chloroplast genome of Ph. japonicum was 153,397 bp in length and contained a pair of IR regions (25,601 bp) separated by a small single copy region (17,728 bp) and a large single copy region (84,467 bp). The cp genome of Ph. japonicum encoded 125 genes including 86 protein-coding genes, 31 tRNA genes and eight ribosomal RNA genes. The overall GC content of Ph. japonicum cp genome is 38.3%. By phylogenetic analysis using ML method, Ph. japonicum was placed in family Orobanchaceae and showed the closest relationship with Castilleja paramensis. |
| first_indexed | 2024-03-11T13:20:08Z |
| format | Article |
| id | doaj.art-fe10f5e4c96e425aa538ea1631762875 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:20:08Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-fe10f5e4c96e425aa538ea16317628752023-11-03T10:38:48ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01423439344010.1080/23802359.2019.16732541673254Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae)Yong-Chao Li0Xin-Liang Zhao1Jing Yang2Qing-Yun Fu3Henan Institute of Science and TechnologyHenan Institute of Science and TechnologyHenan Institute of Science and TechnologyHenan Institute of Science and TechnologyIn this study, we report the complete chloroplast (cp) genome of Phtheirospermum japonicum was determined through Illumina sequencing method. The complete chloroplast genome of Ph. japonicum was 153,397 bp in length and contained a pair of IR regions (25,601 bp) separated by a small single copy region (17,728 bp) and a large single copy region (84,467 bp). The cp genome of Ph. japonicum encoded 125 genes including 86 protein-coding genes, 31 tRNA genes and eight ribosomal RNA genes. The overall GC content of Ph. japonicum cp genome is 38.3%. By phylogenetic analysis using ML method, Ph. japonicum was placed in family Orobanchaceae and showed the closest relationship with Castilleja paramensis.http://dx.doi.org/10.1080/23802359.2019.1673254phtheirospermum japonicumchloroplast genomephylogenetic analysis |
| spellingShingle | Yong-Chao Li Xin-Liang Zhao Jing Yang Qing-Yun Fu Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae) Mitochondrial DNA. Part B. Resources phtheirospermum japonicum chloroplast genome phylogenetic analysis |
| title | Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae) |
| title_full | Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae) |
| title_fullStr | Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae) |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae) |
| title_short | Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae) |
| title_sort | characterization of the complete chloroplast genome of phtheirospermum japonicum rhinantheae |
| topic | phtheirospermum japonicum chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1673254 |
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