The complete mitochondrial genome of Stibochiona nicea (Gray, 1846) (Lepidoptera: Nymphalidae) and phylogenetic analysis
In this study, the complete mitochondrial genome (mitogenome) of Stibochiona nicea (Gray, 1846) (Lepidoptera: Nymphalidae) was first reported with 15,298 bp in size, containing 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes (rrnL and rrnS), and one control region. The nucleotide compo...
| Main Authors: | , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2023-06-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2023.2221348 |
| _version_ | 1797638544577003520 |
|---|---|
| author | Hangying Zhang Qinghe Chen Qiaoyu Xie Qinghua Lin Gang Sun Yan Fang Qinghui Shi |
| author_facet | Hangying Zhang Qinghe Chen Qiaoyu Xie Qinghua Lin Gang Sun Yan Fang Qinghui Shi |
| author_sort | Hangying Zhang |
| collection | DOAJ |
| description | In this study, the complete mitochondrial genome (mitogenome) of Stibochiona nicea (Gray, 1846) (Lepidoptera: Nymphalidae) was first reported with 15,298 bp in size, containing 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes (rrnL and rrnS), and one control region. The nucleotide composition of the entire mitogenome is highly A + T biased (81.5%). The gene content and arrangement of the newly sequenced mitogenome are identical to those of the other available mitogenomes of Nymphalidae. All PCGs start with the conventional ATN codons, except for cox1 initiating with atypical CGA(R). Nine PCGs (atp8, atp6, cox3, nad1, nad2, nad3, nad4l, nad6, and cob) utilize a typical stop codon TAA, whereas the remaining PCGs (cox1, cox2, nad4, and nad5) end with an incomplete stop codon T–. Phylogenetic analysis revealed that S. nicea is closely related to Dichorragia nesimachus within Pseudergolinae, which further forms the sister group to the grouping of (Nymphalinae + (Cyrestinae + (Biblidinae + Apaturinae))). The complete mitogenome of S. nicea will provide useful genetic information for improving the taxonomic system and phylogenetics of Nymphalidae. |
| first_indexed | 2024-03-11T13:03:59Z |
| format | Article |
| id | doaj.art-fe35efe02aeb4f1699b1615b5365600d |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:03:59Z |
| publishDate | 2023-06-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-fe35efe02aeb4f1699b1615b5365600d2023-11-03T14:44:07ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592023-06-018664865210.1080/23802359.2023.22213482221348The complete mitochondrial genome of Stibochiona nicea (Gray, 1846) (Lepidoptera: Nymphalidae) and phylogenetic analysisHangying Zhang0Qinghe Chen1Qiaoyu Xie2Qinghua Lin3Gang Sun4Yan Fang5Qinghui Shi6School of Resources and Chemical Engineering, Sanming UniversitySchool of Resources and Chemical Engineering, Sanming UniversitySchool of Resources and Chemical Engineering, Sanming UniversitySchool of Resources and Chemical Engineering, Sanming UniversitySchool of Resources and Chemical Engineering, Sanming UniversitySchool of Resources and Chemical Engineering, Sanming UniversitySchool of Resources and Chemical Engineering, Sanming UniversityIn this study, the complete mitochondrial genome (mitogenome) of Stibochiona nicea (Gray, 1846) (Lepidoptera: Nymphalidae) was first reported with 15,298 bp in size, containing 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes (rrnL and rrnS), and one control region. The nucleotide composition of the entire mitogenome is highly A + T biased (81.5%). The gene content and arrangement of the newly sequenced mitogenome are identical to those of the other available mitogenomes of Nymphalidae. All PCGs start with the conventional ATN codons, except for cox1 initiating with atypical CGA(R). Nine PCGs (atp8, atp6, cox3, nad1, nad2, nad3, nad4l, nad6, and cob) utilize a typical stop codon TAA, whereas the remaining PCGs (cox1, cox2, nad4, and nad5) end with an incomplete stop codon T–. Phylogenetic analysis revealed that S. nicea is closely related to Dichorragia nesimachus within Pseudergolinae, which further forms the sister group to the grouping of (Nymphalinae + (Cyrestinae + (Biblidinae + Apaturinae))). The complete mitogenome of S. nicea will provide useful genetic information for improving the taxonomic system and phylogenetics of Nymphalidae.http://dx.doi.org/10.1080/23802359.2023.2221348nymphalidaestibochiona niceamitochondrial genomephylogeny |
| spellingShingle | Hangying Zhang Qinghe Chen Qiaoyu Xie Qinghua Lin Gang Sun Yan Fang Qinghui Shi The complete mitochondrial genome of Stibochiona nicea (Gray, 1846) (Lepidoptera: Nymphalidae) and phylogenetic analysis Mitochondrial DNA. Part B. Resources nymphalidae stibochiona nicea mitochondrial genome phylogeny |
| title | The complete mitochondrial genome of Stibochiona nicea (Gray, 1846) (Lepidoptera: Nymphalidae) and phylogenetic analysis |
| title_full | The complete mitochondrial genome of Stibochiona nicea (Gray, 1846) (Lepidoptera: Nymphalidae) and phylogenetic analysis |
| title_fullStr | The complete mitochondrial genome of Stibochiona nicea (Gray, 1846) (Lepidoptera: Nymphalidae) and phylogenetic analysis |
| title_full_unstemmed | The complete mitochondrial genome of Stibochiona nicea (Gray, 1846) (Lepidoptera: Nymphalidae) and phylogenetic analysis |
| title_short | The complete mitochondrial genome of Stibochiona nicea (Gray, 1846) (Lepidoptera: Nymphalidae) and phylogenetic analysis |
| title_sort | complete mitochondrial genome of stibochiona nicea gray 1846 lepidoptera nymphalidae and phylogenetic analysis |
| topic | nymphalidae stibochiona nicea mitochondrial genome phylogeny |
| url | http://dx.doi.org/10.1080/23802359.2023.2221348 |
| work_keys_str_mv | AT hangyingzhang thecompletemitochondrialgenomeofstibochionaniceagray1846lepidopteranymphalidaeandphylogeneticanalysis AT qinghechen thecompletemitochondrialgenomeofstibochionaniceagray1846lepidopteranymphalidaeandphylogeneticanalysis AT qiaoyuxie thecompletemitochondrialgenomeofstibochionaniceagray1846lepidopteranymphalidaeandphylogeneticanalysis AT qinghualin thecompletemitochondrialgenomeofstibochionaniceagray1846lepidopteranymphalidaeandphylogeneticanalysis AT gangsun thecompletemitochondrialgenomeofstibochionaniceagray1846lepidopteranymphalidaeandphylogeneticanalysis AT yanfang thecompletemitochondrialgenomeofstibochionaniceagray1846lepidopteranymphalidaeandphylogeneticanalysis AT qinghuishi thecompletemitochondrialgenomeofstibochionaniceagray1846lepidopteranymphalidaeandphylogeneticanalysis AT hangyingzhang completemitochondrialgenomeofstibochionaniceagray1846lepidopteranymphalidaeandphylogeneticanalysis AT qinghechen completemitochondrialgenomeofstibochionaniceagray1846lepidopteranymphalidaeandphylogeneticanalysis AT qiaoyuxie completemitochondrialgenomeofstibochionaniceagray1846lepidopteranymphalidaeandphylogeneticanalysis AT qinghualin completemitochondrialgenomeofstibochionaniceagray1846lepidopteranymphalidaeandphylogeneticanalysis AT gangsun completemitochondrialgenomeofstibochionaniceagray1846lepidopteranymphalidaeandphylogeneticanalysis AT yanfang completemitochondrialgenomeofstibochionaniceagray1846lepidopteranymphalidaeandphylogeneticanalysis AT qinghuishi completemitochondrialgenomeofstibochionaniceagray1846lepidopteranymphalidaeandphylogeneticanalysis |