Characterization of the complete chloroplast genome of Paphiopedilum micranthum, an Endangered orchid in China
Paphiopedilum micranthum is a rare species of terrestrial herb in the Orchidaceae. It is naturally distributed in southwestern China and north of Vietnam. Here, we reported the first complete chloroplast genome (cpDNA) of P. micranthum. The length is 163,243 bp, with 129 genes, including 77 protein...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1698330 |
| _version_ | 1797639536851812352 |
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| author | Xian-De Chen Dong-Hui Peng Si-Ren Lan Jun Chen Wen-Qun Fu |
| author_facet | Xian-De Chen Dong-Hui Peng Si-Ren Lan Jun Chen Wen-Qun Fu |
| author_sort | Xian-De Chen |
| collection | DOAJ |
| description | Paphiopedilum micranthum is a rare species of terrestrial herb in the Orchidaceae. It is naturally distributed in southwestern China and north of Vietnam. Here, we reported the first complete chloroplast genome (cpDNA) of P. micranthum. The length is 163,243 bp, with 129 genes, including 77 protein coding genes, 38 tRNA genes, and 8 rRNA genes. It includes two inverted repeat regions (IRs) of 36,128 bp each, which were separated by a large single copy region (LSC) of 89,245 bp and a small single copy region (SSC) of 1742 bp. The overall GC-content of the whole chloroplast is 35.8%, while the corresponding values of the LSC, SSC, and IR regions are 33.2, 20, and 39.3, respectively. The complete chloroplast genome sequence of P. micranthum (GenBank accession number: MN535014) can be used as a useful resource for the evolutionary biology study of phylogenetic studies in Orchidaceae. |
| first_indexed | 2024-03-11T13:19:07Z |
| format | Article |
| id | doaj.art-ff135abfa14a4d5eb22c44f4d7c0bf0d |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:07Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-ff135abfa14a4d5eb22c44f4d7c0bf0d2023-11-03T10:38:53ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-015111511610.1080/23802359.2019.16983301698330Characterization of the complete chloroplast genome of Paphiopedilum micranthum, an Endangered orchid in ChinaXian-De Chen0Dong-Hui Peng1Si-Ren Lan2Jun Chen3Wen-Qun Fu4College of Biological Science and Biotechnology, Minnan Normal UniversityFujian Ornamental Plant Germplasm Resources Innovation and Engineering Application Research CenterFujian Ornamental Plant Germplasm Resources Innovation and Engineering Application Research CenterCollege of Biological Science and Biotechnology, Minnan Normal UniversityCollege of Biological Science and Biotechnology, Minnan Normal UniversityPaphiopedilum micranthum is a rare species of terrestrial herb in the Orchidaceae. It is naturally distributed in southwestern China and north of Vietnam. Here, we reported the first complete chloroplast genome (cpDNA) of P. micranthum. The length is 163,243 bp, with 129 genes, including 77 protein coding genes, 38 tRNA genes, and 8 rRNA genes. It includes two inverted repeat regions (IRs) of 36,128 bp each, which were separated by a large single copy region (LSC) of 89,245 bp and a small single copy region (SSC) of 1742 bp. The overall GC-content of the whole chloroplast is 35.8%, while the corresponding values of the LSC, SSC, and IR regions are 33.2, 20, and 39.3, respectively. The complete chloroplast genome sequence of P. micranthum (GenBank accession number: MN535014) can be used as a useful resource for the evolutionary biology study of phylogenetic studies in Orchidaceae.http://dx.doi.org/10.1080/23802359.2019.1698330paphiopedilum micranthumchloroplast genomephylogenetic |
| spellingShingle | Xian-De Chen Dong-Hui Peng Si-Ren Lan Jun Chen Wen-Qun Fu Characterization of the complete chloroplast genome of Paphiopedilum micranthum, an Endangered orchid in China Mitochondrial DNA. Part B. Resources paphiopedilum micranthum chloroplast genome phylogenetic |
| title | Characterization of the complete chloroplast genome of Paphiopedilum micranthum, an Endangered orchid in China |
| title_full | Characterization of the complete chloroplast genome of Paphiopedilum micranthum, an Endangered orchid in China |
| title_fullStr | Characterization of the complete chloroplast genome of Paphiopedilum micranthum, an Endangered orchid in China |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Paphiopedilum micranthum, an Endangered orchid in China |
| title_short | Characterization of the complete chloroplast genome of Paphiopedilum micranthum, an Endangered orchid in China |
| title_sort | characterization of the complete chloroplast genome of paphiopedilum micranthum an endangered orchid in china |
| topic | paphiopedilum micranthum chloroplast genome phylogenetic |
| url | http://dx.doi.org/10.1080/23802359.2019.1698330 |
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