The complete mitochondrial genome of the blue runner, Caranx crysos (Mitchill, 1815) (Teleostei: Carangidae)
Caranx crysos was collected from offshore of Sierra Leone and its complete mitochondrial genome was determined using next-generation sequencing (NGS). The circular mitogenome encoded a typical 37 genes, including 13 protein-coding genes (PCGs), 2 ribosomal RNA genes (12S rRNA and 16S rRNA), and 22 t...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-04-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1917319 |
| _version_ | 1797638908991766528 |
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| author | A-Young Jeon Ji-Hyun Lee Sapto Andriyono J. Adonis Zuweh Hyun-Woo Kim |
| author_facet | A-Young Jeon Ji-Hyun Lee Sapto Andriyono J. Adonis Zuweh Hyun-Woo Kim |
| author_sort | A-Young Jeon |
| collection | DOAJ |
| description | Caranx crysos was collected from offshore of Sierra Leone and its complete mitochondrial genome was determined using next-generation sequencing (NGS). The circular mitogenome encoded a typical 37 genes, including 13 protein-coding genes (PCGs), 2 ribosomal RNA genes (12S rRNA and 16S rRNA), and 22 tRNA genes. An unusual start codon (GTG) was identified for the COX1 gene, and incomplete stop codons (T–/TA–) were found in seven genes, including ND2, ND3, ND4, COX2, COX3, ATP6, and CytB. All tRNAs were predicted to fold into the typical clover-leaf structures, except for tRNASer-GCT, which lacks the D-arm. C. crysos formed a monoclade with the tree other species belonging to the genus Caranx, apart from the others. Among them, C. crysos was most closely related to Caranx melampygus and Caranx tille. The mitogenome sequence of C. crysos provides information for a better understanding of evolutionary relationships, systemic, and mitogenomic study within the family Carangidae. |
| first_indexed | 2024-03-11T13:09:10Z |
| format | Article |
| id | doaj.art-ff5a38f8b2bc4d75b627ecb25fceb691 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:09:10Z |
| publishDate | 2021-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-ff5a38f8b2bc4d75b627ecb25fceb6912023-11-03T14:16:10ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-04-01641519152010.1080/23802359.2021.19173191917319The complete mitochondrial genome of the blue runner, Caranx crysos (Mitchill, 1815) (Teleostei: Carangidae)A-Young Jeon0Ji-Hyun Lee1Sapto Andriyono2J. Adonis Zuweh3Hyun-Woo Kim4Department of Marine Biology, Pukyong National UniversityDepartment of Marine Biology, Pukyong National UniversityDepartment of Marine, Fisheries and Marine Faculty, Universitas Airlangga C Campus Jl. Mulyorejo Surabaya East JavaNational Fisheries and Aquaculture AuthorityDepartment of Marine Biology, Pukyong National UniversityCaranx crysos was collected from offshore of Sierra Leone and its complete mitochondrial genome was determined using next-generation sequencing (NGS). The circular mitogenome encoded a typical 37 genes, including 13 protein-coding genes (PCGs), 2 ribosomal RNA genes (12S rRNA and 16S rRNA), and 22 tRNA genes. An unusual start codon (GTG) was identified for the COX1 gene, and incomplete stop codons (T–/TA–) were found in seven genes, including ND2, ND3, ND4, COX2, COX3, ATP6, and CytB. All tRNAs were predicted to fold into the typical clover-leaf structures, except for tRNASer-GCT, which lacks the D-arm. C. crysos formed a monoclade with the tree other species belonging to the genus Caranx, apart from the others. Among them, C. crysos was most closely related to Caranx melampygus and Caranx tille. The mitogenome sequence of C. crysos provides information for a better understanding of evolutionary relationships, systemic, and mitogenomic study within the family Carangidae.http://dx.doi.org/10.1080/23802359.2021.1917319carangidaecaranx crysosmitogenomenext-generation sequencing |
| spellingShingle | A-Young Jeon Ji-Hyun Lee Sapto Andriyono J. Adonis Zuweh Hyun-Woo Kim The complete mitochondrial genome of the blue runner, Caranx crysos (Mitchill, 1815) (Teleostei: Carangidae) Mitochondrial DNA. Part B. Resources carangidae caranx crysos mitogenome next-generation sequencing |
| title | The complete mitochondrial genome of the blue runner, Caranx crysos (Mitchill, 1815) (Teleostei: Carangidae) |
| title_full | The complete mitochondrial genome of the blue runner, Caranx crysos (Mitchill, 1815) (Teleostei: Carangidae) |
| title_fullStr | The complete mitochondrial genome of the blue runner, Caranx crysos (Mitchill, 1815) (Teleostei: Carangidae) |
| title_full_unstemmed | The complete mitochondrial genome of the blue runner, Caranx crysos (Mitchill, 1815) (Teleostei: Carangidae) |
| title_short | The complete mitochondrial genome of the blue runner, Caranx crysos (Mitchill, 1815) (Teleostei: Carangidae) |
| title_sort | complete mitochondrial genome of the blue runner caranx crysos mitchill 1815 teleostei carangidae |
| topic | carangidae caranx crysos mitogenome next-generation sequencing |
| url | http://dx.doi.org/10.1080/23802359.2021.1917319 |
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