Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studies
Abstract Birds in seasonal habitats rely on intricate strategies for optimal timing of migrations. This is governed by environmental cues, including photoperiod. Genetic factors affecting intrinsic timekeeping mechanisms, such as circadian clock genes, have been explored, yielding inconsistent findi...
| Main Authors: | , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Nature Portfolio
2023-11-01
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| Series: | Scientific Data |
| Online Access: | https://doi.org/10.1038/s41597-023-02717-8 |
| _version_ | 1831886104027987968 |
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| author | Louis-Stéphane Le Clercq Gaia Bazzi Joan Ferrer Obiol Jacopo G. Cecere Luca Gianfranceschi J. Paul Grobler Antoinette Kotzé Marta Riutort León Jacob González-Solís Diego Rubolini Miriam Liedvogel Desiré Lee Dalton |
| author_facet | Louis-Stéphane Le Clercq Gaia Bazzi Joan Ferrer Obiol Jacopo G. Cecere Luca Gianfranceschi J. Paul Grobler Antoinette Kotzé Marta Riutort León Jacob González-Solís Diego Rubolini Miriam Liedvogel Desiré Lee Dalton |
| author_sort | Louis-Stéphane Le Clercq |
| collection | DOAJ |
| description | Abstract Birds in seasonal habitats rely on intricate strategies for optimal timing of migrations. This is governed by environmental cues, including photoperiod. Genetic factors affecting intrinsic timekeeping mechanisms, such as circadian clock genes, have been explored, yielding inconsistent findings with potential lineage-dependency. To clarify this evidence, a systematic review and phylogenetic reanalysis was done. This descriptor outlines the methodology for sourcing, screening, and processing relevant literature and data. PRISMA guidelines were followed, ultimately including 66 studies, with 34 focusing on candidate genes at the genotype-phenotype interface. Studies were clustered using bibliographic coupling and citation network analysis, alongside scientometric analyses by publication year and location. Data was retrieved for allele data from databases, article supplements, and direct author communications. The dataset, version 1.0.2, encompasses data from 52 species, with 46 species for the Clock gene and 43 for the Adcyap1 gene. This dataset, featuring data from over 8000 birds, constitutes the most extensive cross-species collection for these candidate genes, used in studies investigating gene polymorphisms and seasonal bird migration. |
| first_indexed | 2024-03-11T11:09:02Z |
| format | Article |
| id | doaj.art-ff935aadcf0b4905b2ccaba12e32c994 |
| institution | Directory Open Access Journal |
| issn | 2052-4463 |
| language | English |
| last_indexed | 2025-03-21T23:38:23Z |
| publishDate | 2023-11-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Data |
| spelling | doaj.art-ff935aadcf0b4905b2ccaba12e32c9942024-05-19T11:09:05ZengNature PortfolioScientific Data2052-44632023-11-0110111210.1038/s41597-023-02717-8Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studiesLouis-Stéphane Le Clercq0Gaia Bazzi1Joan Ferrer Obiol2Jacopo G. Cecere3Luca Gianfranceschi4J. Paul Grobler5Antoinette Kotzé6Marta Riutort León7Jacob González-Solís8Diego Rubolini9Miriam Liedvogel10Desiré Lee Dalton11South African National Biodiversity InstituteArea Avifauna Migratrice, Istituto Superiore per la Protezione e la Ricerca AmbientaleDepartament de Genètica, Universitat de BarcelonaArea Avifauna Migratrice, Istituto Superiore per la Protezione e la Ricerca AmbientaleDipartimento di Bioscienze, Università degli Studi di MilanoDepartment of Genetics, University of the Free StateSouth African National Biodiversity InstituteDepartament de Genètica, Universitat de BarcelonaInstitut de Recerca de la Biodiversitat (IRBio), Universitat de BarcelonaDipartimento di Scienze e Politiche Ambientali, Università degli Studi di MilanoMax Planck Research Group Behavioural Genomics, Max Planck Institute for Evolutionary BiologySchool of Health and Life Sciences, Teesside UniversityAbstract Birds in seasonal habitats rely on intricate strategies for optimal timing of migrations. This is governed by environmental cues, including photoperiod. Genetic factors affecting intrinsic timekeeping mechanisms, such as circadian clock genes, have been explored, yielding inconsistent findings with potential lineage-dependency. To clarify this evidence, a systematic review and phylogenetic reanalysis was done. This descriptor outlines the methodology for sourcing, screening, and processing relevant literature and data. PRISMA guidelines were followed, ultimately including 66 studies, with 34 focusing on candidate genes at the genotype-phenotype interface. Studies were clustered using bibliographic coupling and citation network analysis, alongside scientometric analyses by publication year and location. Data was retrieved for allele data from databases, article supplements, and direct author communications. The dataset, version 1.0.2, encompasses data from 52 species, with 46 species for the Clock gene and 43 for the Adcyap1 gene. This dataset, featuring data from over 8000 birds, constitutes the most extensive cross-species collection for these candidate genes, used in studies investigating gene polymorphisms and seasonal bird migration.https://doi.org/10.1038/s41597-023-02717-8 |
| spellingShingle | Louis-Stéphane Le Clercq Gaia Bazzi Joan Ferrer Obiol Jacopo G. Cecere Luca Gianfranceschi J. Paul Grobler Antoinette Kotzé Marta Riutort León Jacob González-Solís Diego Rubolini Miriam Liedvogel Desiré Lee Dalton Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studies Scientific Data |
| title | Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studies |
| title_full | Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studies |
| title_fullStr | Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studies |
| title_full_unstemmed | Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studies |
| title_short | Birds of a feather flock together: a dataset for Clock and Adcyap1 genes from migration genetics studies |
| title_sort | birds of a feather flock together a dataset for clock and adcyap1 genes from migration genetics studies |
| url | https://doi.org/10.1038/s41597-023-02717-8 |
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