Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone
Oxygen minimum zones (OMZs) are natural physical features of the world's oceans. They create steep physiochemical gradients in the water column, which most notably include a dramatic draw down in oxygen concentrations over small vertical distances (<100 m). Microbial communities within OMZs...
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| Format: | Article |
| Language: | en_US |
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Ecological Society of America
2016
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| Online Access: | http://hdl.handle.net/1721.1/101417 https://orcid.org/0000-0001-8958-4345 |
| _version_ | 1826192638052663296 |
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| author | Stewart, Frank J. Eppley, John M. Bryant, Jessica A. DeLong, Edward Francis |
| author2 | Massachusetts Institute of Technology. Department of Civil and Environmental Engineering |
| author_facet | Massachusetts Institute of Technology. Department of Civil and Environmental Engineering Stewart, Frank J. Eppley, John M. Bryant, Jessica A. DeLong, Edward Francis |
| author_sort | Stewart, Frank J. |
| collection | MIT |
| description | Oxygen minimum zones (OMZs) are natural physical features of the world's oceans. They create steep physiochemical gradients in the water column, which most notably include a dramatic draw down in oxygen concentrations over small vertical distances (<100 m). Microbial communities within OMZs play central roles in ocean and global biogeochemical cycles, yet we still lack a fundamental understanding of how microbial biodiversity is distributed across OMZs. Here, we used metagenomic sequencing to investigate microbial diversity across a vertical gradient in the water column during three seasons in the Eastern Tropical South Pacific (ETSP) OMZ. Based on analysis of small subunit ribosomal RNA (SSU rRNA) gene fragments, we found that both taxonomic and phylogenetic diversity declined steeply along the transition from oxygen-rich surface water to the permanent OMZ. We observed similar declines in the diversity of protein-coding gene categories, suggesting a decrease in functional (trait) diversity with depth. Metrics of functional and trait dispersion indicated that microbial communities are phylogenetically and functionally more overdispersed in oxic waters, but clustered within the OMZ. These dispersion patterns suggest that community assembly drivers (e.g., competition, environmental filtering) vary strikingly across the oxygen gradient. To understand the generality of our findings, we compared OMZ results to two marine depth gradients in subtropical oligotrophic sites and found that the oligotrophic sites did not display similar patterns, likely reflecting unique features found in the OMZ. Finally, we discuss how our results may relate to niche theory, diversity–energy relationships and stress gradients. |
| first_indexed | 2024-09-23T09:26:52Z |
| format | Article |
| id | mit-1721.1/101417 |
| institution | Massachusetts Institute of Technology |
| language | en_US |
| last_indexed | 2024-09-23T09:26:52Z |
| publishDate | 2016 |
| publisher | Ecological Society of America |
| record_format | dspace |
| spelling | mit-1721.1/1014172022-09-30T14:27:43Z Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone Stewart, Frank J. Eppley, John M. Bryant, Jessica A. DeLong, Edward Francis Massachusetts Institute of Technology. Department of Civil and Environmental Engineering Bryant, Jessica A. Eppley, John M. DeLong, Edward Francis Oxygen minimum zones (OMZs) are natural physical features of the world's oceans. They create steep physiochemical gradients in the water column, which most notably include a dramatic draw down in oxygen concentrations over small vertical distances (<100 m). Microbial communities within OMZs play central roles in ocean and global biogeochemical cycles, yet we still lack a fundamental understanding of how microbial biodiversity is distributed across OMZs. Here, we used metagenomic sequencing to investigate microbial diversity across a vertical gradient in the water column during three seasons in the Eastern Tropical South Pacific (ETSP) OMZ. Based on analysis of small subunit ribosomal RNA (SSU rRNA) gene fragments, we found that both taxonomic and phylogenetic diversity declined steeply along the transition from oxygen-rich surface water to the permanent OMZ. We observed similar declines in the diversity of protein-coding gene categories, suggesting a decrease in functional (trait) diversity with depth. Metrics of functional and trait dispersion indicated that microbial communities are phylogenetically and functionally more overdispersed in oxic waters, but clustered within the OMZ. These dispersion patterns suggest that community assembly drivers (e.g., competition, environmental filtering) vary strikingly across the oxygen gradient. To understand the generality of our findings, we compared OMZ results to two marine depth gradients in subtropical oligotrophic sites and found that the oligotrophic sites did not display similar patterns, likely reflecting unique features found in the OMZ. Finally, we discuss how our results may relate to niche theory, diversity–energy relationships and stress gradients. Agouron Institute Gordon and Betty Moore Foundation National Science Foundation (U.S.). Science and Technology Center (Award EF0424599) 2016-03-02T23:23:25Z 2016-03-02T23:23:25Z 2012-07 2011-12 Article http://purl.org/eprint/type/JournalArticle 0012-9658 http://hdl.handle.net/1721.1/101417 Bryant, Jessica A., Frank J. Stewart, John M. Eppley, and Edward F. DeLong. “Microbial Community Phylogenetic and Trait Diversity Declines with Depth in a Marine Oxygen Minimum Zone.” Ecology 93, no. 7 (July 2012): 1659–1673. © 2012 Ecological Society of America https://orcid.org/0000-0001-8958-4345 en_US http://dx.doi.org/10.1890/11-1204.1 Ecology Article is made available in accordance with the publisher's policy and may be subject to US copyright law. Please refer to the publisher's site for terms of use. application/pdf Ecological Society of America Ecology |
| spellingShingle | Stewart, Frank J. Eppley, John M. Bryant, Jessica A. DeLong, Edward Francis Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone |
| title | Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone |
| title_full | Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone |
| title_fullStr | Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone |
| title_full_unstemmed | Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone |
| title_short | Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone |
| title_sort | microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone |
| url | http://hdl.handle.net/1721.1/101417 https://orcid.org/0000-0001-8958-4345 |
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