Activity-Induced DNA Breaks Govern the Expression of Neuronal Early-Response Genes

Neuronal activity causes the rapid expression of immediate early genes that are crucial for experience-driven changes to synapses, learning, and memory. Here, using both molecular and genome-wide next-generation sequencing methods, we report that neuronal activity stimulation triggers the formation...

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Bibliographic Details
Main Authors: Madabhushi, Ram, Pfenning, Andreas R., Gao, Fan, Pan, Ling, Yamakawa, Satoko, Seo, Jinsoo, Rueda IV, Richard, Phan, Trongha, Yamakawa, Hidekuni, Pao, Ping-Chieh, Stott, Ryan T, Gjoneska, Elizabeta, Nott, Alexander, Cho, Sukhee, Kellis, Manolis, Tsai, Li-Huei
Other Authors: Broad Institute of MIT and Harvard
Format: Article
Language:en_US
Published: Elsevier 2017
Online Access:http://hdl.handle.net/1721.1/111076
https://orcid.org/0000-0002-3447-9801
https://orcid.org/0000-0001-9947-9071
https://orcid.org/0000-0003-3812-7851
https://orcid.org/0000-0001-6788-7185
https://orcid.org/0000-0003-3870-7725
https://orcid.org/0000-0002-3255-4740
https://orcid.org/0000-0002-2029-7193
https://orcid.org/0000-0003-1262-0592
Description
Summary:Neuronal activity causes the rapid expression of immediate early genes that are crucial for experience-driven changes to synapses, learning, and memory. Here, using both molecular and genome-wide next-generation sequencing methods, we report that neuronal activity stimulation triggers the formation of DNA double strand breaks (DSBs) in the promoters of a subset of early-response genes, including Fos, Npas4, and Egr1. Generation of targeted DNA DSBs within Fos and Npas4 promoters is sufficient to induce their expression even in the absence of an external stimulus. Activity-dependent DSB formation is likely mediated by the type II topoisomerase, Topoisomerase IIβ (Topo IIβ), and knockdown of Topo IIβ attenuates both DSB formation and early-response gene expression following neuronal stimulation. Our results suggest that DSB formation is a physiological event that rapidly resolves topological constraints to early-response gene expression in neurons.