On computing the solubility of molecular systems subject to constraints using the extended Einstein crystal method

A method to compute solubilities for molecular systems using atomistic simulations, based on an extension of the Einstein crystal method, has recently been presented [Li et al., J. Chem. Phys. 146, 214110 (2017)]. This methodology is particularly appealing to compute solubilities in cases of practic...

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Main Authors: Gobbo, Gianpaolo, Ciccotti, Giovanni, Trout, Bernhardt L.
Other Authors: Massachusetts Institute of Technology. Department of Chemical Engineering
Format: Article
Language:English
Published: AIP Publishing 2020
Online Access:https://hdl.handle.net/1721.1/125004
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author Gobbo, Gianpaolo
Ciccotti, Giovanni
Trout, Bernhardt L.
author2 Massachusetts Institute of Technology. Department of Chemical Engineering
author_facet Massachusetts Institute of Technology. Department of Chemical Engineering
Gobbo, Gianpaolo
Ciccotti, Giovanni
Trout, Bernhardt L.
author_sort Gobbo, Gianpaolo
collection MIT
description A method to compute solubilities for molecular systems using atomistic simulations, based on an extension of the Einstein crystal method, has recently been presented [Li et al., J. Chem. Phys. 146, 214110 (2017)]. This methodology is particularly appealing to compute solubilities in cases of practical importance including, but not limited to, solutions where the solute is sparingly soluble and molecules of importance for the pharmaceutical industry, which are often characterized by strong polar interactions and slow relaxation time scales. The mathematical derivation of this methodology hinges on a factorization of the partition function which is not necessarily applicable in the case of a system subject to holonomic molecular constraints. We show here that, although the mathematical procedure to derive it is slightly different, essentially the same mathematical relation for calculating the solubility can be safely applied for computing the solubility of systems subject to constraints, which are the majority of the systems used for practical molecular simulations.
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spelling mit-1721.1/1250042022-10-01T04:23:21Z On computing the solubility of molecular systems subject to constraints using the extended Einstein crystal method Gobbo, Gianpaolo Ciccotti, Giovanni Trout, Bernhardt L. Massachusetts Institute of Technology. Department of Chemical Engineering A method to compute solubilities for molecular systems using atomistic simulations, based on an extension of the Einstein crystal method, has recently been presented [Li et al., J. Chem. Phys. 146, 214110 (2017)]. This methodology is particularly appealing to compute solubilities in cases of practical importance including, but not limited to, solutions where the solute is sparingly soluble and molecules of importance for the pharmaceutical industry, which are often characterized by strong polar interactions and slow relaxation time scales. The mathematical derivation of this methodology hinges on a factorization of the partition function which is not necessarily applicable in the case of a system subject to holonomic molecular constraints. We show here that, although the mathematical procedure to derive it is slightly different, essentially the same mathematical relation for calculating the solubility can be safely applied for computing the solubility of systems subject to constraints, which are the majority of the systems used for practical molecular simulations. 2020-05-05T14:33:56Z 2020-05-05T14:33:56Z 2019-05 2019-04 2019-09-13T17:12:04Z Article http://purl.org/eprint/type/JournalArticle 1089-7690 0021-9606 https://hdl.handle.net/1721.1/125004 Gobbo, Gianpaolo, et al. “On Computing the Solubility of Molecular Systems Subject to Constraints Using the Extended Einstein Crystal Method.” The Journal of Chemical Physics 150, 20 (May 2019): 201104. © 2019 the Authors en http://dx.doi.org/10.1063/1.5099378 Journal of Chemical Physics Article is made available in accordance with the publisher's policy and may be subject to US copyright law. Please refer to the publisher's site for terms of use. application/pdf AIP Publishing Other repository
spellingShingle Gobbo, Gianpaolo
Ciccotti, Giovanni
Trout, Bernhardt L.
On computing the solubility of molecular systems subject to constraints using the extended Einstein crystal method
title On computing the solubility of molecular systems subject to constraints using the extended Einstein crystal method
title_full On computing the solubility of molecular systems subject to constraints using the extended Einstein crystal method
title_fullStr On computing the solubility of molecular systems subject to constraints using the extended Einstein crystal method
title_full_unstemmed On computing the solubility of molecular systems subject to constraints using the extended Einstein crystal method
title_short On computing the solubility of molecular systems subject to constraints using the extended Einstein crystal method
title_sort on computing the solubility of molecular systems subject to constraints using the extended einstein crystal method
url https://hdl.handle.net/1721.1/125004
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