Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1
People who are engineering biological organisms often find it useful to communicate in diagrams, both about the structure of the nucleic acid sequences that they are engineering and about the functional relationships between sequence features and other molecular species . Some typical practices and...
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| Format: | Article |
| Language: | English |
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Walter de Gruyter GmbH
2020
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| Online Access: | https://hdl.handle.net/1721.1/125304 |
| _version_ | 1826202289051795456 |
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| author | Voigt, Christopher A. |
| author2 | Massachusetts Institute of Technology. Department of Biological Engineering |
| author_facet | Massachusetts Institute of Technology. Department of Biological Engineering Voigt, Christopher A. |
| author_sort | Voigt, Christopher A. |
| collection | MIT |
| description | People who are engineering biological organisms often find it useful to communicate in diagrams, both about the structure of the nucleic acid sequences that they are engineering and about the functional relationships between sequence features and other molecular species . Some typical practices and conventions have begun to emerge for such diagrams. The Synthetic Biology Open Language Visual (SBOL Visual) has been developed as a standard for organizing and systematizing such conventions in order to produce a coherent language for expressing the structure and function of genetic designs. This document details version 2.1 of SBOL Visual, which builds on the prior SBOL Visual 2.0 standard by expanding diagram syntax to include methods for showing modular structure and mappings between elements of a system, interactions arrows that can split or join (with the glyph at the split or join indicating either superposition or a chemical process), and adding new glyphs for indicating genomic context (e.g., integration into a plasmid or genome) and for stop codons. |
| first_indexed | 2024-09-23T12:05:09Z |
| format | Article |
| id | mit-1721.1/125304 |
| institution | Massachusetts Institute of Technology |
| language | English |
| last_indexed | 2024-09-23T12:05:09Z |
| publishDate | 2020 |
| publisher | Walter de Gruyter GmbH |
| record_format | dspace |
| spelling | mit-1721.1/1253042022-09-28T00:01:33Z Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1 Voigt, Christopher A. Massachusetts Institute of Technology. Department of Biological Engineering People who are engineering biological organisms often find it useful to communicate in diagrams, both about the structure of the nucleic acid sequences that they are engineering and about the functional relationships between sequence features and other molecular species . Some typical practices and conventions have begun to emerge for such diagrams. The Synthetic Biology Open Language Visual (SBOL Visual) has been developed as a standard for organizing and systematizing such conventions in order to produce a coherent language for expressing the structure and function of genetic designs. This document details version 2.1 of SBOL Visual, which builds on the prior SBOL Visual 2.0 standard by expanding diagram syntax to include methods for showing modular structure and mappings between elements of a system, interactions arrows that can split or join (with the glyph at the split or join indicating either superposition or a chemical process), and adding new glyphs for indicating genomic context (e.g., integration into a plasmid or genome) and for stop codons. 2020-05-19T12:49:24Z 2020-05-19T12:49:24Z 2019-06 2020-03-18T14:03:08Z Article http://purl.org/eprint/type/JournalArticle 1613-4516 https://hdl.handle.net/1721.1/125304 Madsen, Curtis et al. “Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.” Journal of integrative bioinformatics 16 (2019): 20180101 © 2019 The Author(s) en 10.1515/JIB-2018-0101 Journal of integrative bioinformatics Creative Commons Attribution 4.0 International license https://creativecommons.org/licenses/by/4.0/ application/pdf Walter de Gruyter GmbH De Gruyter |
| spellingShingle | Voigt, Christopher A. Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1 |
| title | Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1 |
| title_full | Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1 |
| title_fullStr | Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1 |
| title_full_unstemmed | Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1 |
| title_short | Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1 |
| title_sort | synthetic biology open language visual sbol visual version 2 1 |
| url | https://hdl.handle.net/1721.1/125304 |
| work_keys_str_mv | AT voigtchristophera syntheticbiologyopenlanguagevisualsbolvisualversion21 |