Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments
Prochlorococcus and Synechococcus are the dominant primary producers in marine ecosystems and perform a significant fraction of ocean carbon fixation. These cyanobacteria interact with a diverse microbial community that coexists with them. Comparative genomics of cultivated isolates has helped addre...
| Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Springer Science and Business Media LLC
2020
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| Online Access: | https://hdl.handle.net/1721.1/125466 |
| _version_ | 1826217201874501632 |
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| author | Berube, Paul M. Biller, Steven Hackl, Thomas Hogle, Shane L. Satinsky, Brandon Meyer Becker, Jamie William Braakman, Rogier Collins, Sara B. Kelly, Libusha Berta-Thompson, Jessie Coe, Allison Bergauer, Kristin Bouman, Heather A. Browning, Thomas J. De Corte, Daniele Hassler, Christel Hulata, Yotam Jacquot, Jeremy E. Maas, Elizabeth W. Reinthaler, Thomas Sintes, Eva Yokokawa, Taichi Lindell, Debbie Stepanauskas, Ramunas Chisholm, Sallie W |
| author2 | Massachusetts Institute of Technology. Department of Biology |
| author_facet | Massachusetts Institute of Technology. Department of Biology Berube, Paul M. Biller, Steven Hackl, Thomas Hogle, Shane L. Satinsky, Brandon Meyer Becker, Jamie William Braakman, Rogier Collins, Sara B. Kelly, Libusha Berta-Thompson, Jessie Coe, Allison Bergauer, Kristin Bouman, Heather A. Browning, Thomas J. De Corte, Daniele Hassler, Christel Hulata, Yotam Jacquot, Jeremy E. Maas, Elizabeth W. Reinthaler, Thomas Sintes, Eva Yokokawa, Taichi Lindell, Debbie Stepanauskas, Ramunas Chisholm, Sallie W |
| author_sort | Berube, Paul M. |
| collection | MIT |
| description | Prochlorococcus and Synechococcus are the dominant primary producers in marine ecosystems and perform a significant fraction of ocean carbon fixation. These cyanobacteria interact with a diverse microbial community that coexists with them. Comparative genomics of cultivated isolates has helped address questions regarding patterns of evolution and diversity among microbes, but the fraction that can be cultivated is miniscule compared to the diversity in the wild. To further probe the diversity of these groups and extend the utility of reference sequence databases, we report a data set of single cell genomes for 489 Prochlorococcus, 50 Synechococcus, 9 extracellular virus particles, and 190 additional microorganisms from a diverse range of bacterial, archaeal, and viral groups. Many of these uncultivated single cell genomes are derived from samples obtained on GEOTRACES cruises and at well-studied oceanographic stations, each with extensive suites of physical, chemical, and biological measurements. The genomic data reported here greatly increases the number of available Prochlorococcus genomes and will facilitate studies on evolutionary biology, microbial ecology, and biological oceanography. |
| first_indexed | 2024-09-23T16:59:39Z |
| format | Article |
| id | mit-1721.1/125466 |
| institution | Massachusetts Institute of Technology |
| language | English |
| last_indexed | 2024-09-23T16:59:39Z |
| publishDate | 2020 |
| publisher | Springer Science and Business Media LLC |
| record_format | dspace |
| spelling | mit-1721.1/1254662022-09-29T22:58:41Z Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments Berube, Paul M. Biller, Steven Hackl, Thomas Hogle, Shane L. Satinsky, Brandon Meyer Becker, Jamie William Braakman, Rogier Collins, Sara B. Kelly, Libusha Berta-Thompson, Jessie Coe, Allison Bergauer, Kristin Bouman, Heather A. Browning, Thomas J. De Corte, Daniele Hassler, Christel Hulata, Yotam Jacquot, Jeremy E. Maas, Elizabeth W. Reinthaler, Thomas Sintes, Eva Yokokawa, Taichi Lindell, Debbie Stepanauskas, Ramunas Chisholm, Sallie W Massachusetts Institute of Technology. Department of Biology Massachusetts Institute of Technology. Department of Civil and Environmental Engineering Prochlorococcus and Synechococcus are the dominant primary producers in marine ecosystems and perform a significant fraction of ocean carbon fixation. These cyanobacteria interact with a diverse microbial community that coexists with them. Comparative genomics of cultivated isolates has helped address questions regarding patterns of evolution and diversity among microbes, but the fraction that can be cultivated is miniscule compared to the diversity in the wild. To further probe the diversity of these groups and extend the utility of reference sequence databases, we report a data set of single cell genomes for 489 Prochlorococcus, 50 Synechococcus, 9 extracellular virus particles, and 190 additional microorganisms from a diverse range of bacterial, archaeal, and viral groups. Many of these uncultivated single cell genomes are derived from samples obtained on GEOTRACES cruises and at well-studied oceanographic stations, each with extensive suites of physical, chemical, and biological measurements. The genomic data reported here greatly increases the number of available Prochlorococcus genomes and will facilitate studies on evolutionary biology, microbial ecology, and biological oceanography. Simons Foundation (Award 337262) Simons Foundation (Award 329108) Gordon and Betty Moore Foundation (Grant GBMF495) Gordon and Betty Moore Foundation (Grant GBMF4511) National Science Foundation (Grant OCE-1153588) National Science Foundation (Grant OCE-1356460) National Science Foundation (Grant DBI-0424599) 2020-05-26T21:23:35Z 2020-05-26T21:23:35Z 2018-09 2018-03 2020-05-20T18:39:41Z Article http://purl.org/eprint/type/JournalArticle 2052-4463 https://hdl.handle.net/1721.1/125466 Berube, P. et al. Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments. Scientific Data 5, 1 (September 2018): 180154. © 2018 The Author(s) en http://dx.doi.org/10.1038/sdata.2018.154 Scientific Data Creative Commons Attribution 4.0 International license https://creativecommons.org/licenses/by/4.0/ application/pdf Springer Science and Business Media LLC Scientific Data |
| spellingShingle | Berube, Paul M. Biller, Steven Hackl, Thomas Hogle, Shane L. Satinsky, Brandon Meyer Becker, Jamie William Braakman, Rogier Collins, Sara B. Kelly, Libusha Berta-Thompson, Jessie Coe, Allison Bergauer, Kristin Bouman, Heather A. Browning, Thomas J. De Corte, Daniele Hassler, Christel Hulata, Yotam Jacquot, Jeremy E. Maas, Elizabeth W. Reinthaler, Thomas Sintes, Eva Yokokawa, Taichi Lindell, Debbie Stepanauskas, Ramunas Chisholm, Sallie W Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments |
| title | Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments |
| title_full | Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments |
| title_fullStr | Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments |
| title_full_unstemmed | Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments |
| title_short | Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments |
| title_sort | single cell genomes of prochlorococcus synechococcus and sympatric microbes from diverse marine environments |
| url | https://hdl.handle.net/1721.1/125466 |
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