Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance
To our knowledge, this is the first study to identify the bacteriophage distribution in a groundwater ecosystem shedding light on their prevalence and distribution across metal-contaminated and background sites. Our study is uniquely based on selective sequencing of solely the extrachromosomal eleme...
| Main Authors: | , , , , , , , , , , , , , , |
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| Other Authors: | |
| Format: | Article |
| Language: | English |
| Published: |
American Society for Microbiology
2021
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| Online Access: | https://hdl.handle.net/1721.1/131283 |
| _version_ | 1811080925748920320 |
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| author | Kothari, Ankita Roux, Simon Zhang, Hanqiao Prieto, Anatori Soneja, Drishti Chandonia, John-Marc Spencer, Sarah J. Wu, Xiaoqin Altenburg, Sara Fields, Matthew W. Deutschbauer, Adam M. Arkin, Adam P. Alm, Eric J Chakraborty, Romy Mukhopadhyay, Aindrila |
| author2 | Massachusetts Institute of Technology. Department of Biological Engineering |
| author_facet | Massachusetts Institute of Technology. Department of Biological Engineering Kothari, Ankita Roux, Simon Zhang, Hanqiao Prieto, Anatori Soneja, Drishti Chandonia, John-Marc Spencer, Sarah J. Wu, Xiaoqin Altenburg, Sara Fields, Matthew W. Deutschbauer, Adam M. Arkin, Adam P. Alm, Eric J Chakraborty, Romy Mukhopadhyay, Aindrila |
| author_sort | Kothari, Ankita |
| collection | MIT |
| description | To our knowledge, this is the first study to identify the bacteriophage distribution in a groundwater ecosystem shedding light on their prevalence and distribution across metal-contaminated and background sites. Our study is uniquely based on selective sequencing of solely the extrachromosomal elements of a microbiome followed by analysis for viral signatures, thus establishing a more focused approach for phage identifications. |
| first_indexed | 2024-09-23T11:39:02Z |
| format | Article |
| id | mit-1721.1/131283 |
| institution | Massachusetts Institute of Technology |
| language | English |
| last_indexed | 2024-09-23T11:39:02Z |
| publishDate | 2021 |
| publisher | American Society for Microbiology |
| record_format | dspace |
| spelling | mit-1721.1/1312832022-09-27T21:00:04Z Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance Kothari, Ankita Roux, Simon Zhang, Hanqiao Prieto, Anatori Soneja, Drishti Chandonia, John-Marc Spencer, Sarah J. Wu, Xiaoqin Altenburg, Sara Fields, Matthew W. Deutschbauer, Adam M. Arkin, Adam P. Alm, Eric J Chakraborty, Romy Mukhopadhyay, Aindrila Massachusetts Institute of Technology. Department of Biological Engineering To our knowledge, this is the first study to identify the bacteriophage distribution in a groundwater ecosystem shedding light on their prevalence and distribution across metal-contaminated and background sites. Our study is uniquely based on selective sequencing of solely the extrachromosomal elements of a microbiome followed by analysis for viral signatures, thus establishing a more focused approach for phage identifications. 2021-09-16T19:43:27Z 2021-09-16T19:43:27Z 2021-06 2021-05 2021-08-24T17:55:05Z Article http://purl.org/eprint/type/JournalArticle 2379-5077 https://hdl.handle.net/1721.1/131283 Kothari Ankita et al. "Ecogenomics of groundwater phages suggests niche differentiation linked to specific environmental tolerance." mSystems 6 (June 2021): e00537-21. © 2021 Kothari et al. en http://dx.doi.org/10.1128/msystems.00537-21 mSystems Creative Commons Attribution 4.0 International license https://creativecommons.org/licenses/by/4.0/ application/pdf American Society for Microbiology mSystems |
| spellingShingle | Kothari, Ankita Roux, Simon Zhang, Hanqiao Prieto, Anatori Soneja, Drishti Chandonia, John-Marc Spencer, Sarah J. Wu, Xiaoqin Altenburg, Sara Fields, Matthew W. Deutschbauer, Adam M. Arkin, Adam P. Alm, Eric J Chakraborty, Romy Mukhopadhyay, Aindrila Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance |
| title | Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance |
| title_full | Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance |
| title_fullStr | Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance |
| title_full_unstemmed | Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance |
| title_short | Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance |
| title_sort | ecogenomics of groundwater phages suggests niche differentiation linked to specific environmental tolerance |
| url | https://hdl.handle.net/1721.1/131283 |
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