Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity—at Depth and in Real Time

© 2020 Elsevier Inc. We propose a new paradigm for dense functional imaging of brain activity to surmount the limitations of present methodologies. We term this approach “integrated neurophotonics”; it combines recent advances in microchip-based integrated photonic and electronic circuitry with thos...

Full description

Bibliographic Details
Main Authors: Moreaux, Laurent C, Yatsenko, Dimitri, Sacher, Wesley D, Choi, Jaebin, Lee, Changhyuk, Kubat, Nicole J, Cotton, R James, Boyden, Edward S, Lin, Michael Z, Tian, Lin, Tolias, Andreas S, Poon, Joyce KS, Shepard, Kenneth L, Roukes, Michael L
Other Authors: Howard Hughes Medical Institute
Format: Article
Language:English
Published: Elsevier BV 2021
Online Access:https://hdl.handle.net/1721.1/138171
_version_ 1811088752367370240
author Moreaux, Laurent C
Yatsenko, Dimitri
Sacher, Wesley D
Choi, Jaebin
Lee, Changhyuk
Kubat, Nicole J
Cotton, R James
Boyden, Edward S
Lin, Michael Z
Tian, Lin
Tolias, Andreas S
Poon, Joyce KS
Shepard, Kenneth L
Roukes, Michael L
author2 Howard Hughes Medical Institute
author_facet Howard Hughes Medical Institute
Moreaux, Laurent C
Yatsenko, Dimitri
Sacher, Wesley D
Choi, Jaebin
Lee, Changhyuk
Kubat, Nicole J
Cotton, R James
Boyden, Edward S
Lin, Michael Z
Tian, Lin
Tolias, Andreas S
Poon, Joyce KS
Shepard, Kenneth L
Roukes, Michael L
author_sort Moreaux, Laurent C
collection MIT
description © 2020 Elsevier Inc. We propose a new paradigm for dense functional imaging of brain activity to surmount the limitations of present methodologies. We term this approach “integrated neurophotonics”; it combines recent advances in microchip-based integrated photonic and electronic circuitry with those from optogenetics. This approach has the potential to enable lens-less functional imaging from within the brain itself to achieve dense, large-scale stimulation and recording of brain activity with cellular resolution at arbitrary depths. We perform a computational study of several prototype 3D architectures for implantable probe-array modules that are designed to provide fast and dense single-cell resolution (e.g., within a 1-mm3 volume of mouse cortex comprising ∼100,000 neurons). We describe progress toward realizing integrated neurophotonic imaging modules, which can be produced en masse with current semiconductor foundry protocols for chip manufacturing. Implantation of multiple modules can cover extended brain regions. Moreaux et al. describe a new paradigm for dense functional imaging of brain activity that surmounts limitations of present methodologies. It enables functional imaging from within the brain, permitting dense, large-scale brain circuit interrogation with cellular resolution at arbitrary depths.
first_indexed 2024-09-23T14:06:56Z
format Article
id mit-1721.1/138171
institution Massachusetts Institute of Technology
language English
last_indexed 2024-09-23T14:06:56Z
publishDate 2021
publisher Elsevier BV
record_format dspace
spelling mit-1721.1/1381712023-12-07T14:39:23Z Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity—at Depth and in Real Time Moreaux, Laurent C Yatsenko, Dimitri Sacher, Wesley D Choi, Jaebin Lee, Changhyuk Kubat, Nicole J Cotton, R James Boyden, Edward S Lin, Michael Z Tian, Lin Tolias, Andreas S Poon, Joyce KS Shepard, Kenneth L Roukes, Michael L Howard Hughes Medical Institute McGovern Institute for Brain Research at MIT Koch Institute for Integrative Cancer Research at MIT Massachusetts Institute of Technology. Department of Brain and Cognitive Sciences Program in Media Arts and Sciences (Massachusetts Institute of Technology) Massachusetts Institute of Technology. Department of Biological Engineering © 2020 Elsevier Inc. We propose a new paradigm for dense functional imaging of brain activity to surmount the limitations of present methodologies. We term this approach “integrated neurophotonics”; it combines recent advances in microchip-based integrated photonic and electronic circuitry with those from optogenetics. This approach has the potential to enable lens-less functional imaging from within the brain itself to achieve dense, large-scale stimulation and recording of brain activity with cellular resolution at arbitrary depths. We perform a computational study of several prototype 3D architectures for implantable probe-array modules that are designed to provide fast and dense single-cell resolution (e.g., within a 1-mm3 volume of mouse cortex comprising ∼100,000 neurons). We describe progress toward realizing integrated neurophotonic imaging modules, which can be produced en masse with current semiconductor foundry protocols for chip manufacturing. Implantation of multiple modules can cover extended brain regions. Moreaux et al. describe a new paradigm for dense functional imaging of brain activity that surmounts limitations of present methodologies. It enables functional imaging from within the brain, permitting dense, large-scale brain circuit interrogation with cellular resolution at arbitrary depths. 2021-11-19T19:48:01Z 2021-11-19T19:48:01Z 2020 2021-11-19T19:43:44Z Article http://purl.org/eprint/type/JournalArticle https://hdl.handle.net/1721.1/138171 Moreaux, Laurent C, Yatsenko, Dimitri, Sacher, Wesley D, Choi, Jaebin, Lee, Changhyuk et al. 2020. "Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity—at Depth and in Real Time." Neuron, 108 (1). en 10.1016/J.NEURON.2020.09.043 Neuron Creative Commons Attribution-NonCommercial-NoDerivs License http://creativecommons.org/licenses/by-nc-nd/4.0/ application/pdf Elsevier BV PMC
spellingShingle Moreaux, Laurent C
Yatsenko, Dimitri
Sacher, Wesley D
Choi, Jaebin
Lee, Changhyuk
Kubat, Nicole J
Cotton, R James
Boyden, Edward S
Lin, Michael Z
Tian, Lin
Tolias, Andreas S
Poon, Joyce KS
Shepard, Kenneth L
Roukes, Michael L
Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity—at Depth and in Real Time
title Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity—at Depth and in Real Time
title_full Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity—at Depth and in Real Time
title_fullStr Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity—at Depth and in Real Time
title_full_unstemmed Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity—at Depth and in Real Time
title_short Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity—at Depth and in Real Time
title_sort integrated neurophotonics toward dense volumetric interrogation of brain circuit activity at depth and in real time
url https://hdl.handle.net/1721.1/138171
work_keys_str_mv AT moreauxlaurentc integratedneurophotonicstowarddensevolumetricinterrogationofbraincircuitactivityatdepthandinrealtime
AT yatsenkodimitri integratedneurophotonicstowarddensevolumetricinterrogationofbraincircuitactivityatdepthandinrealtime
AT sacherwesleyd integratedneurophotonicstowarddensevolumetricinterrogationofbraincircuitactivityatdepthandinrealtime
AT choijaebin integratedneurophotonicstowarddensevolumetricinterrogationofbraincircuitactivityatdepthandinrealtime
AT leechanghyuk integratedneurophotonicstowarddensevolumetricinterrogationofbraincircuitactivityatdepthandinrealtime
AT kubatnicolej integratedneurophotonicstowarddensevolumetricinterrogationofbraincircuitactivityatdepthandinrealtime
AT cottonrjames integratedneurophotonicstowarddensevolumetricinterrogationofbraincircuitactivityatdepthandinrealtime
AT boydenedwards integratedneurophotonicstowarddensevolumetricinterrogationofbraincircuitactivityatdepthandinrealtime
AT linmichaelz integratedneurophotonicstowarddensevolumetricinterrogationofbraincircuitactivityatdepthandinrealtime
AT tianlin integratedneurophotonicstowarddensevolumetricinterrogationofbraincircuitactivityatdepthandinrealtime
AT toliasandreass integratedneurophotonicstowarddensevolumetricinterrogationofbraincircuitactivityatdepthandinrealtime
AT poonjoyceks integratedneurophotonicstowarddensevolumetricinterrogationofbraincircuitactivityatdepthandinrealtime
AT shepardkennethl integratedneurophotonicstowarddensevolumetricinterrogationofbraincircuitactivityatdepthandinrealtime
AT roukesmichaell integratedneurophotonicstowarddensevolumetricinterrogationofbraincircuitactivityatdepthandinrealtime