Pd-Catalyzed Cross-Coupling, High Throughput Experimentation, and Machine Learning
Chapter 1: Monophosphine Ligands Promote Pd-Catalyzed C–S Cross-Coupling Reactions at Room Temperature with Soluble Bases. The Pd-catalyzed cross-coupling of thiols with aromatic electrophiles is a reliable method for the synthesis of aryl thioethers, which are important compounds for pharmaceuti...
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Massachusetts Institute of Technology
2023
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| Online Access: | https://hdl.handle.net/1721.1/147457 |
| _version_ | 1826215525039996928 |
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| author | Xu, Jessica |
| author2 | Buchwald, Stephen L. |
| author_facet | Buchwald, Stephen L. Xu, Jessica |
| author_sort | Xu, Jessica |
| collection | MIT |
| description | Chapter 1: Monophosphine Ligands Promote Pd-Catalyzed C–S Cross-Coupling Reactions at Room Temperature with Soluble Bases.
The Pd-catalyzed cross-coupling of thiols with aromatic electrophiles is a reliable method for the synthesis of aryl thioethers, which are important compounds for pharmaceutical and agricultural applications. Since thiols and thiolates strongly bind late transition metals, previous research has focused on catalysts supported by chelating, bisphosphine ligands, which were considered less likely to be displaced during the course of the reaction. We show that by using monophosphine ligands instead, more effective catalysis can be achieved. Notably, compared to previous methods, this increased reactivity allows for the use of much lower reaction temperature, soluble bases, and base-sensitive substrates. In contrast to conventional wisdom, our mechanistic data suggest that the extent of displacement of phosphine ligands by thiols is, firstly, not correlated with the ligand bulk or thiol nucleophilicity, and secondly, not predictive of the effectiveness of a given ligand in combination with palladium.
Chapter 2: Practical Machine Learning for Exploring Multidimensional Reaction Spaces
Machine learning (ML) methods have the potential to leverage high throughput experimentation (HTE) data to solve problems in organic chemistry. One such problem is identification of potentially successful reactions for library generation. This work focuses on Pd–catalyzed C–N cross coupling, where the number of combinations of reaction components can easily number in the millions or billions. To address this practical problem, the work herein identifies state–of–the– art HTE–friendly coupling conditions, generates a dataset appropriate to the targeted reaction space, and demonstrates the out–of–scope predictivity of trained models. These methods could enable chemists to quickly filter out unlikely reactions in silico prior to library screening, potentially saving many hours of tedious and expensive experimental work. |
| first_indexed | 2024-09-23T16:33:19Z |
| format | Thesis |
| id | mit-1721.1/147457 |
| institution | Massachusetts Institute of Technology |
| last_indexed | 2024-09-23T16:33:19Z |
| publishDate | 2023 |
| publisher | Massachusetts Institute of Technology |
| record_format | dspace |
| spelling | mit-1721.1/1474572023-01-20T03:03:12Z Pd-Catalyzed Cross-Coupling, High Throughput Experimentation, and Machine Learning Xu, Jessica Buchwald, Stephen L. Jensen, Klavs F. Massachusetts Institute of Technology. Department of Chemistry Chapter 1: Monophosphine Ligands Promote Pd-Catalyzed C–S Cross-Coupling Reactions at Room Temperature with Soluble Bases. The Pd-catalyzed cross-coupling of thiols with aromatic electrophiles is a reliable method for the synthesis of aryl thioethers, which are important compounds for pharmaceutical and agricultural applications. Since thiols and thiolates strongly bind late transition metals, previous research has focused on catalysts supported by chelating, bisphosphine ligands, which were considered less likely to be displaced during the course of the reaction. We show that by using monophosphine ligands instead, more effective catalysis can be achieved. Notably, compared to previous methods, this increased reactivity allows for the use of much lower reaction temperature, soluble bases, and base-sensitive substrates. In contrast to conventional wisdom, our mechanistic data suggest that the extent of displacement of phosphine ligands by thiols is, firstly, not correlated with the ligand bulk or thiol nucleophilicity, and secondly, not predictive of the effectiveness of a given ligand in combination with palladium. Chapter 2: Practical Machine Learning for Exploring Multidimensional Reaction Spaces Machine learning (ML) methods have the potential to leverage high throughput experimentation (HTE) data to solve problems in organic chemistry. One such problem is identification of potentially successful reactions for library generation. This work focuses on Pd–catalyzed C–N cross coupling, where the number of combinations of reaction components can easily number in the millions or billions. To address this practical problem, the work herein identifies state–of–the– art HTE–friendly coupling conditions, generates a dataset appropriate to the targeted reaction space, and demonstrates the out–of–scope predictivity of trained models. These methods could enable chemists to quickly filter out unlikely reactions in silico prior to library screening, potentially saving many hours of tedious and expensive experimental work. Ph.D. 2023-01-19T19:51:49Z 2023-01-19T19:51:49Z 2022-09 2022-10-25T17:28:24.665Z Thesis https://hdl.handle.net/1721.1/147457 0000-0003-2587-9587 In Copyright - Educational Use Permitted Copyright MIT http://rightsstatements.org/page/InC-EDU/1.0/ application/pdf Massachusetts Institute of Technology |
| spellingShingle | Xu, Jessica Pd-Catalyzed Cross-Coupling, High Throughput Experimentation, and Machine Learning |
| title | Pd-Catalyzed Cross-Coupling, High Throughput Experimentation, and Machine Learning |
| title_full | Pd-Catalyzed Cross-Coupling, High Throughput Experimentation, and Machine Learning |
| title_fullStr | Pd-Catalyzed Cross-Coupling, High Throughput Experimentation, and Machine Learning |
| title_full_unstemmed | Pd-Catalyzed Cross-Coupling, High Throughput Experimentation, and Machine Learning |
| title_short | Pd-Catalyzed Cross-Coupling, High Throughput Experimentation, and Machine Learning |
| title_sort | pd catalyzed cross coupling high throughput experimentation and machine learning |
| url | https://hdl.handle.net/1721.1/147457 |
| work_keys_str_mv | AT xujessica pdcatalyzedcrosscouplinghighthroughputexperimentationandmachinelearning |