Draft genomes of three closely related low light-adapted Prochlorococcus
Abstract Objectives The marine cyanobacterium Prochlorococcus is a critical part of warm ocean ecosystems and a model for studying microbial evolution and ecology. To expand the representation of this organism’s vast wild diversity in sequence collec...
| Main Authors: | , , , , , , , , |
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| Format: | Article |
| Language: | English |
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BioMed Central
2023
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| Online Access: | https://hdl.handle.net/1721.1/148227 |
| _version_ | 1826205299212550144 |
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| author | Berta-Thompson, Jessie W. Thomas, Elaina Cubillos-Ruiz, Andrés Hackl, Thomas Becker, Jamie W. Coe, Allison Biller, Steven J. Berube, Paul M. Chisholm, Sallie W. |
| author2 | Massachusetts Institute of Technology. Department of Civil and Environmental Engineering |
| author_facet | Massachusetts Institute of Technology. Department of Civil and Environmental Engineering Berta-Thompson, Jessie W. Thomas, Elaina Cubillos-Ruiz, Andrés Hackl, Thomas Becker, Jamie W. Coe, Allison Biller, Steven J. Berube, Paul M. Chisholm, Sallie W. |
| author_sort | Berta-Thompson, Jessie W. |
| collection | MIT |
| description | Abstract
Objectives
The marine cyanobacterium Prochlorococcus is a critical part of warm ocean ecosystems and a model for studying microbial evolution and ecology. To expand the representation of this organism’s vast wild diversity in sequence collections, we performed a set of isolation efforts targeting low light-adapted Prochlorococcus. Three genomes resulting from this larger body of work are described here.
Data description
We present draft-quality Prochlorococcus genomes from enrichment cultures P1344, P1361, and P1363, sampled in the North Pacific. The genomes were built from Illumina paired reads assembled de novo. Supporting datasets of raw reads, assessments, and sequences from co-enriched heterotrophic marine bacteria are also provided. These three genomes represent members of the low light-adapted LLIV Prochlorococcus clade that are closely related, with 99.9% average nucleotide identity between pairs, yet vary in gene content. Expanding the powerful toolkit of Prochlorococcus genomes, these sequences provide an opportunity to study fine-scale variation and microevolutionary processes. |
| first_indexed | 2024-09-23T13:10:28Z |
| format | Article |
| id | mit-1721.1/148227 |
| institution | Massachusetts Institute of Technology |
| language | English |
| last_indexed | 2024-09-23T13:10:28Z |
| publishDate | 2023 |
| publisher | BioMed Central |
| record_format | dspace |
| spelling | mit-1721.1/1482272024-01-08T20:25:04Z Draft genomes of three closely related low light-adapted Prochlorococcus Berta-Thompson, Jessie W. Thomas, Elaina Cubillos-Ruiz, Andrés Hackl, Thomas Becker, Jamie W. Coe, Allison Biller, Steven J. Berube, Paul M. Chisholm, Sallie W. Massachusetts Institute of Technology. Department of Civil and Environmental Engineering Massachusetts Institute of Technology. Department of Biology Abstract Objectives The marine cyanobacterium Prochlorococcus is a critical part of warm ocean ecosystems and a model for studying microbial evolution and ecology. To expand the representation of this organism’s vast wild diversity in sequence collections, we performed a set of isolation efforts targeting low light-adapted Prochlorococcus. Three genomes resulting from this larger body of work are described here. Data description We present draft-quality Prochlorococcus genomes from enrichment cultures P1344, P1361, and P1363, sampled in the North Pacific. The genomes were built from Illumina paired reads assembled de novo. Supporting datasets of raw reads, assessments, and sequences from co-enriched heterotrophic marine bacteria are also provided. These three genomes represent members of the low light-adapted LLIV Prochlorococcus clade that are closely related, with 99.9% average nucleotide identity between pairs, yet vary in gene content. Expanding the powerful toolkit of Prochlorococcus genomes, these sequences provide an opportunity to study fine-scale variation and microevolutionary processes. 2023-02-27T15:09:00Z 2023-02-27T15:09:00Z 2023-02-24 2023-02-26T04:15:21Z Article http://purl.org/eprint/type/JournalArticle https://hdl.handle.net/1721.1/148227 BMC Genomic Data. 2023 Feb 24;24(1):11 PUBLISHER_CC en https://doi.org/10.1186/s12863-022-01103-4 Creative Commons Attribution https://creativecommons.org/licenses/by/4.0/ The Author(s) application/pdf BioMed Central BioMed Central |
| spellingShingle | Berta-Thompson, Jessie W. Thomas, Elaina Cubillos-Ruiz, Andrés Hackl, Thomas Becker, Jamie W. Coe, Allison Biller, Steven J. Berube, Paul M. Chisholm, Sallie W. Draft genomes of three closely related low light-adapted Prochlorococcus |
| title | Draft genomes of three closely related low light-adapted Prochlorococcus |
| title_full | Draft genomes of three closely related low light-adapted Prochlorococcus |
| title_fullStr | Draft genomes of three closely related low light-adapted Prochlorococcus |
| title_full_unstemmed | Draft genomes of three closely related low light-adapted Prochlorococcus |
| title_short | Draft genomes of three closely related low light-adapted Prochlorococcus |
| title_sort | draft genomes of three closely related low light adapted prochlorococcus |
| url | https://hdl.handle.net/1721.1/148227 |
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