BioJADE : a design and simulation tool for synthetic biological systems
Thesis (M. Eng. and S.B.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2004.
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| Format: | Thesis |
| Language: | en_US |
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Massachusetts Institute of Technology
2005
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| Online Access: | http://hdl.handle.net/1721.1/28408 |
| _version_ | 1811096560883204096 |
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| author | Goler, Jonathan Ari, 1980- |
| author2 | Thomas F. Knight, Jr. |
| author_facet | Thomas F. Knight, Jr. Goler, Jonathan Ari, 1980- |
| author_sort | Goler, Jonathan Ari, 1980- |
| collection | MIT |
| description | Thesis (M. Eng. and S.B.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2004. |
| first_indexed | 2024-09-23T16:45:38Z |
| format | Thesis |
| id | mit-1721.1/28408 |
| institution | Massachusetts Institute of Technology |
| language | en_US |
| last_indexed | 2024-09-23T16:45:38Z |
| publishDate | 2005 |
| publisher | Massachusetts Institute of Technology |
| record_format | dspace |
| spelling | mit-1721.1/284082019-04-11T14:38:03Z BioJADE : a design and simulation tool for synthetic biological systems Design and simulation tool for synthetic biological systems Goler, Jonathan Ari, 1980- Thomas F. Knight, Jr. Massachusetts Institute of Technology. Dept. of Electrical Engineering and Computer Science. Massachusetts Institute of Technology. Dept. of Electrical Engineering and Computer Science. Electrical Engineering and Computer Science. Thesis (M. Eng. and S.B.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2004. Includes bibliographical references (p. 83-85). The next generations of both biological engineering and computer engineering demand that control be exerted at the molecular level. Creating, characterizing and controlling synthetic biological systems may provide us with the ability to build cells that are capable of a plethora of activities, from computation to synthesizing nanostructures. To develop these systems, we must have a set of tools not only for synthesizing systems, but also designing and simulating them. The BioJADE project provides a comprehensive, extensible design and simulation platform for synthetic biology. BioJADE is a graphical design tool built in Java, utilizing a database back end, and supports a range of simulations using an XML communication protocol. BioJADE currently supports a library of over 100 parts with which it can compile designs into actual DNA, and then generate synthesis instructions to build the physical parts. The BioJADE project contributes several tools to Synthetic Biology. BioJADE in itself is a powerful tool for synthetic biology designers. Additionally, we developed and now make use of a centralized BioBricks repository, which enables the sharing of BioBrick components between researchers, and vastly reduces the barriers to entry for aspiring Synthetic Biologists. by Jonathan Ari Goler. M.Eng.and S.B. 2005-09-26T20:17:06Z 2005-09-26T20:17:06Z 2004 2004 Thesis http://hdl.handle.net/1721.1/28408 56985537 en_US M.I.T. theses are protected by copyright. They may be viewed from this source for any purpose, but reproduction or distribution in any format is prohibited without written permission. See provided URL for inquiries about permission. http://dspace.mit.edu/handle/1721.1/7582 85 p. 3341552 bytes 3350832 bytes application/pdf application/pdf application/pdf Massachusetts Institute of Technology |
| spellingShingle | Electrical Engineering and Computer Science. Goler, Jonathan Ari, 1980- BioJADE : a design and simulation tool for synthetic biological systems |
| title | BioJADE : a design and simulation tool for synthetic biological systems |
| title_full | BioJADE : a design and simulation tool for synthetic biological systems |
| title_fullStr | BioJADE : a design and simulation tool for synthetic biological systems |
| title_full_unstemmed | BioJADE : a design and simulation tool for synthetic biological systems |
| title_short | BioJADE : a design and simulation tool for synthetic biological systems |
| title_sort | biojade a design and simulation tool for synthetic biological systems |
| topic | Electrical Engineering and Computer Science. |
| url | http://hdl.handle.net/1721.1/28408 |
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