Fast Methods for Bimolecular Charge Optimization
We report a Hessian-implicit optimization method to quickly solve the charge optimization problem over protein molecules: given a ligand and its complex with a receptor, determine the ligand charge distribution that minimizes the electrostatic free energy of binding. The new optimization couples bou...
Main Authors: | Bardhan, Jaydeep P., Lee, J.H., Kuo, Shihhsien, Altman, Michael D., Tidor, Bruce, White, Jacob K. |
---|---|
Format: | Article |
Language: | en_US |
Published: |
2003
|
Subjects: | |
Online Access: | http://hdl.handle.net/1721.1/3711 |
Similar Items
-
Computational Experience and the Explanatory Value of Condition Numbers for Linear Optimization
by: Ordónez, Fernando, et al.
Published: (2003) -
Fast Methods for Simulation of Biomolecule of Electrostatics
by: Kuo, Shihhsien, et al.
Published: (2003) -
Application of Boundary Element Method to Inviscid Flow Around Thin Airfoils
by: Ahmad Yazid, Aznijar
Published: (2004) -
Preconditioning and iterative solution of symmetric indefinite linear systems arising from interior point methods for linear programming
by: Chai, Joo-Siong, et al.
Published: (2004) -
FastAero – A Precorrected FFT – Fast Multipole Tree Steady and Unsteady Potential Flow Solver
by: Willis, David, et al.
Published: (2004)