Zebrafish promoter microarrays identify actively transcribed embryonic genes

Zebrafish promoter microarrays identify actively transcribed embryonic genes

We have designed a zebrafish genomic microarray to identify DNA-protein interactions in the proximal promoter regions of over 11,000 zebrafish genes. Using these microarrays, together with chromatin immunoprecipitation with an antibody directed against tri-methylated lysine 4 of Histone H3, we demon...

Full description

Bibliographic Details
Main Authors:	Wardle, Fiona C, Odom, Duncan, Bell, George W., Wiellette, Elizabeth L, Herbolsheimer, Elizabeth, Smith, James C, Yuan, Bingbing B., Sive, Hazel L., Danford, Timothy William, Young, Richard A.
Other Authors:	Massachusetts Institute of Technology. Computer Science and Artificial Intelligence Laboratory
Format:	Article
Language:	English
Published:	BioMed Central Ltd 2010
Online Access:	http://hdl.handle.net/1721.1/58880 https://orcid.org/0000-0002-4890-424X https://orcid.org/0000-0001-8855-8647

Similar Items

An assay for permeability of the zebrafish embryonic neuroepithelium
by: Chang, Jessica T., et al.
Published: (2014)

Manual Drainage of the Zebrafish Embryonic Brain Ventricles
by: Chang, Jessica T., et al.
Published: (2014)

Combinatory microarray and SuperSAGE analyses identify pairing-dependently transcribed genes in Schistosoma mansoni males, including follistatin.
by: Silke Leutner, et al.
Published: (2013-11-01)

Challenges in understanding psychiatric disorders and developing therapeutics: a role for zebrafish
by: McCammon, Jasmine M., et al.
Published: (2015)

Analysis of transcribed sequences from young and mature zebrafish thrombocytes.
by: Weam Fallatah, et al.
Published: (2022-01-01)

Analysis of transcribed sequences from young and mature zebrafish thrombocytes
by: Weam Fallatah, et al.
Published: (2022-01-01)

Efficient shRNA-Mediated Inhibition of Gene Expression in Zebrafish
by: Sive, Hazel L., et al.
Published: (2012)

Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays
by: York Abby M, et al.
Published: (2008-05-01)

Challenges in understanding psychiatric disorders and developing therapeutics: a role for zebrafish
by: Jasmine M. McCammon, et al.
Published: (2015-07-01)

Zebrafish cerebrospinal fluid mediates cell survival through a retinoid signaling pathway
by: Lehtinen, Maria K., et al.
Published: (2017)

Bioenergetic profiling of zebrafish embryonic development.
by: Krista D Stackley, et al.
Published: (2011-01-01)

Identification of Novel Transcribed Regions in Zebrafish (Danio rerio) Using RNA-Sequencing.
by: Jingwen Wang, et al.
Published: (2016-01-01)

Characterization of embryonic globin genes of the zebrafish.
by: Brownlie, A, et al.
Published: (2003)

Extensive alternative polyadenylation during zebrafish development
by: Ulitsky, Igor, et al.
Published: (2013)

Poly(A)-tail profiling reveals an embryonic switch in translational control
by: Subtelny, Alexander Orest, et al.
Published: (2015)

The Epicardium in the Embryonic and Adult Zebrafish
by: Marina Peralta, et al.
Published: (2014-04-01)

Identifying Influenza Viruses with Resequencing Microarrays
by: Zheng Wang, et al.
Published: (2006-04-01)

Directional cerebrospinal fluid movement between brain ventricles in larval zebrafish
by: Fame, Ryann M., et al.
Published: (2017)

Directional cerebrospinal fluid movement between brain ventricles in larval zebrafish
by: Hong, Alex, et al.
Published: (2016)

Zygotic vinculin is not essential for embryonic development in zebrafish.
by: Mitchell K L Han, et al.
Published: (2017-01-01)

Transcriptome analysis of zebrafish embryogenesis using microarrays.
by: Sinnakaruppan Mathavan, et al.
Published: (2005-08-01)

Validation of Protein Knockout in Mutant Zebrafish Lines Using In Vitro Translation Assays
by: Carter, Bradley S., et al.
Published: (2017)

Text and Context in Transcribing Papyri
by: Herbert C. Youtie
Published: (2003-02-01)

Novel putative SREBP and LXR target genes identified by microarray analysis in liver of cholesterol-fed mice
by: Kara N. Maxwell, et al.
Published: (2003-11-01)

Optogenetic axon guidance in embryonic zebrafish
by: James M. Harris, et al.
Published: (2021-12-01)

Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution
by: Ulitsky, Igor, et al.
Published: (2014)

Comparative metal oxide nanoparticle toxicity using embryonic zebrafish
by: Leah C. Wehmas, et al.
Published: (2015-01-01)

Mechanisms of Silver Nanoparticle Uptake by Embryonic Zebrafish Cells
by: Ana C. Quevedo, et al.
Published: (2021-10-01)

Identifying diverse metal oxide nanomaterials with lethal effects on embryonic zebrafish using machine learning
by: Richard Liam Marchese Robinson, et al.
Published: (2021-11-01)

The origins and programming of adult and embryonic blood in xenopus and zebrafish.
by: Patient, R, et al.
Published: (2003)

Keeping two animal systems in one lab – a frog plus fish case study
by: Sive, Hazel L.
Published: (2012)

The role of chorion on toxicity of silver nanoparticles in the embryonic zebrafish assay
by: Ki-Tae Kim, et al.
Published: (2014-12-01)

Transcribed dark matter: meaning or myth?
by: Ponting, C, et al.
Published: (2010)

Transcribing Facial Gestures
by: Carolin Dix
Published: (2024-02-01)

Transcribing silent actions
by: Lorenza Mondada
Published: (2019-03-01)

Fluid mechanics of the zebrafish embryonic heart trabeculation.
by: Adriana Gaia Cairelli, et al.
Published: (2022-06-01)

Microarray Noninvasive Neuronal Seizure Recordings from Intact Larval Zebrafish.
by: Michaela Meyer, et al.
Published: (2016-01-01)

Application of internal transcribed spacer (ITS) sequences for identifying Anoectochilus setaceus Blume in Thanh Hoa, Vietnam
by: B. B. Thinh, et al.
Published: (2020-06-01)

TELS: A Novel Computational Framework for Identifying Motif Signatures of Transcribed Enhancers
by: Dimitrios Kleftogiannis, et al.
Published: (2018-10-01)

Ultrastructural Analysis of a Forming Embryonic Embodiment in the Adult Zebrafish Optic Tectum Surviving in Organotypic Culture
by: Ricardo L. Peguero, et al.
Published: (2022-04-01)