Efficient stochastic simulation of reaction-diffusion processes via direct compilation

We present the Stochastic Simulator Compiler (SSC), a tool for exact stochastic simulations of well-mixed and spatially heterogeneous systems. SSC is the first tool to allow a readable high-level description with spatially heterogeneous simulation algorithms and complex geometries; this permits larg...

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Bibliographic Details
Main Authors: Lis, Mieszko, Artyomov, Maxim N., Chakraborty, Arup K., Devadas, Srinivas
Other Authors: Massachusetts Institute of Technology. Computer Science and Artificial Intelligence Laboratory
Format: Article
Language:en_US
Published: Oxford University Press 2010
Online Access:http://hdl.handle.net/1721.1/59816
https://orcid.org/0000-0001-8253-7714
https://orcid.org/0000-0003-1268-9602