Personalizing medicine: a systems biology perspective

According to the SEER Cancer Statistics Review, between 1975 and 2005, the deaths from heart disease in the United States declined from 37.8 to 26.6%, whereas over the same period those from cancer increased from 19.2 to 22.8% (Ries et al, 2008). In the US alone, it is estimated that in 2008 a t...

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Bibliographic Details
Main Author: Deisboeck, Thomas S.
Other Authors: Harvard University--MIT Division of Health Sciences and Technology
Format: Article
Language:en_US
Published: European Molecular Biology Organization / Nature Publishing 2011
Online Access:http://hdl.handle.net/1721.1/61634
Description
Summary:According to the SEER Cancer Statistics Review, between 1975 and 2005, the deaths from heart disease in the United States declined from 37.8 to 26.6%, whereas over the same period those from cancer increased from 19.2 to 22.8% (Ries et al, 2008). In the US alone, it is estimated that in 2008 a total of 565,650 patients will have died from cancer, whereas 1,437,180 will have been newly diagnosed (Jemal et al, 2008). Thus, despite undeniable advancements in early diagnostics and progress in reducing morbidity through therapeutic efforts, it appears that after spending billions of dollars on oncology research since 1971, more than three decades later the ‘war on cancer’ is still far from being won (http:// dtp.nci.nih.gov/timeline/noflash/milestones/M4_Nixon.htm). Although pressure from patients, advocacy groups and funding agencies is mounting, the conventional populationbased approach for therapeutic developments in clinics still relies on passing a series of randomized controlled trials that depend on enrollment of many patients in search for favorable yet averaged outcome patterns that statistically document safety and efficacy. Research and development (R&D) of a new therapeutic drug now takes 10–15 years at a cost in excess of US$1.3 billion, with only 20% of marketed drugs producing revenues that match or exceed their R&D costs (Pharmaceutical Research and Manufacturers of America, 2008). Fueled by the comparably modest progress made so far in pursuing this expensive conventional route, there has been much interest lately in moving toward personalized or patient-specific medicine. For oncology, for instance, ‘specific’ refers to assessing not only tumor type, size, location, patient age and many other parameters that are already used and that result in the conventional grading and staging of the disease; rather, it argues for incorporating also the molecular fingerprint, or signature, and associated growth kinetics of the patient’s tumor when fine-tuning treatment regimen on a case-by-case basis (Roukos et al, 2007). As everyone’s tumor is distinct, to a degree, the ‘one-size-fits-all’ treatment strategy cannot work, so the new paradigm. Although few would argue against the rationale behind the concept per se, what remains unclear, however, is how to actually process personalized medicine when the costs on the diagnostic side, such as that for advanced personalized molecular screenings, cease to be the limiting factor due to a wide range of ongoing biomedical engineering efforts (e.g. Shendure et al, 2008). Next steps will involve having to address as to how to design, run and evaluate clinical trials in this new era, and how to administer personalized health care in reality. That is, (1) following the new paradigm, the averaged results derived from randomized clinical trials will offer insufficient if not even incorrect guidance on how to approach a specific case. Patient responses to a particular drug, for instance, are known to fall into a more or less wide range that deviates from the averaged behavior, a fact that is being made chiefly responsible for why a particular drug works better in some than in others. Although, in an effort to limit adverse side effects for the patient population at large, toxicity testing will likely have to continue to rely on a conventional trial-based approach, efficacy assessment will have to reflect the new paradigm in one form or another. (2) An equally significant challenge looms on the day-to-day operations side in clinics where at any point in time, multiple, slightly varied treatment protocols will have to be designed, administered, monitored and adjusted if need be. At the very least, that puts considerable strains on the existing infrastructure. Also, enrollment numbers will be small, in theory down to one patient per modified regimen, with the obvious consequence that clinical institutions will have to pool and exchange such case-centric data and expertise so that new patients can benefit from past experience. (3) Even if a compound survives the elaborate evaluation processes in the current pharmaceutical ‘pipeline,’ by the time it becomes available, it lags several years behind the pace of basic research that continued while the drug was under development. Consequently, new data would have become available that may point toward different, or higher valued targets, or even question the rationale of the initially chosen strategy altogether. Short of starting the development process all over and facing the same dilemma again in a few years, a workflow has to be designed that allows including new R&D insights, also from this new case-centric medicine, into the development process in an effort to improve the drug’s efficacy at later stages in the pipeline—without compromising patient safety and at acceptable costs for industry