Translation initiation from the ribosomal A site or the P site, dependent on the conformation of RNA pseudoknot I in dicistrovirus RNAs

Translation initiation from the ribosomal A site or the P site, dependent on the conformation of RNA pseudoknot I in dicistrovirus RNAs

available in PMC 2010 July 31.

Bibliographic Details
Main Authors:	Kamoshita, Nobuhiko, Nomoto, Akio, Rajbhandary, Uttam L
Other Authors:	Massachusetts Institute of Technology. Department of Biology
Format:	Article
Language:	en_US
Published:	Elsevier B.V. 2012
Online Access:	http://hdl.handle.net/1721.1/74505 https://orcid.org/0000-0002-4530-5647

Similar Items

Crystal structure and functional studies of a viral RNA pseudoknot involved in ribosomal frameshifting
by: Su, Li, 1971-
Published: (2014)

Sparsification of RNA structure prediction including pseudoknots
by: Mohl, Mathias, et al.
Published: (2011)

RNA-RNA Interactions Enable Specific Targeting of Noncoding RNAs to Nascent Pre-mRNAs and Chromatin Sites
by: Sirokman, Klara, et al.
Published: (2017)

Mechanical unfolding kinetics of the SRV-1 gag-pro mRNA pseudoknot: possible implications for −1 ribosomal frameshifting stimulation
by: Zhong, Zhensheng, et al.
Published: (2017)

Predicting effective microRNA target sites in mammalian mRNAs
by: Agarwal, Vikram, et al.
Published: (2015)

The structural basis for specific decoding of AUA by isoleucine tRNA on the ribosome
by: Voorhees, Rebecca M, et al.
Published: (2014)

Crystal structure of 70S ribosome with both cognate tRNAs in the E and P sites representing an authentic elongation complex
by: Feng, Shu, et al.
Published: (2013)

Targeting simian retrovirus type 1 RNA pseudoknot with small molecules
by: Lau, Qing Yi
Published: (2019)

RNA conformational changes in the life cycles of RNA viruses, viroids, and virus-associated RNAs
by: Simon, Anne E., et al.
Published: (2015)

Monovalent ions modulate the flux through multiple folding pathways of an RNA pseudoknot
by: Roca, Jorjethe, et al.
Published: (2019)

The ribosomal protein Asc1/RACK1 is required for efficient translation of short mRNAs
by: Gangaramani, Paritosh, et al.
Published: (2016)

Molecular dynamics simulation of stretching-force-induced H-type RNA pseudoknot unfolding
by: Seah, Yi Ling
Published: (2016)

Conserved Bacterial RNase YbeY Plays Key Roles in 70S Ribosome Quality Control and 16S rRNA Maturation
by: Davies, Bryan W., et al.
Published: (2014)

Translation Initiation Site Profiling Reveals Widespread Synthesis of Non-AUG-Initiated Protein Isoforms in Yeast
by: Eisenberg, Amy R, et al.
Published: (2021)

Structural basis for linezolid binding site rearrangement in the Staphylococcus aureus ribosome
by: Tofayel Ahmed, et al.
Published: (2019)

Structure determination of a yeast ribosomal protein L30 and pre-mRNA binding site complex by NMR spectroscopy
by: Mao, Hongyuan, 1969-
Published: (2009)

Cell type–specific mRNA purification by translating ribosome affinity purification (TRAP)
by: Heiman, Myriam, et al.
Published: (2016)

Crystallographic Evidence of Drastic Conformational Changes in the Active Site of a Flavin-Dependent
by: Heemstra, John R., et al.
Published: (2017)

Cross-site comparison of ribosomal depletion kits for Illumina RNAseq library construction
by: Herbert, Zachary T, et al.
Published: (2018)

Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation
by: Weinberg, David E., et al.
Published: (2016)

Mapping translation 'hot-spots' in live cells by tracking single molecules of mRNA and ribosomes
by: Katz, Zachary B, et al.
Published: (2016)

Life without tRNA[superscript Ile]-lysidine synthetase: translation of the isoleucine codon AUA in Bacillus subtilis lacking the canonical tRNA[Ile over 2]
by: Koehrer, Caroline, et al.
Published: (2013)

Regulation of ribosomal RNA synthesis in yeast
by: , KULKENS, Tanja, et al.
Published: (1992)

Induction of z-conformation in ribosomal RNA by Z-DNA binding domain Zα of the human double-stranded RNA deaminase I (ADAR1)
by: Zhao, Jing
Published: (2012)

Computational dissection of Arabidopsis smRNAome leads to discovery of novel microRNAs and short interfering RNAs associated with transcription start sites
by: Wang, Xiangfeng, et al.
Published: (2014)

Cytoplasmic long noncoding RNAs are frequently bound to and degraded at ribosomes in human cells
by: Carlevaro-Fita, Joana, et al.
Published: (2016)

Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins
by: Guttman, Mitchell, et al.
Published: (2016)

Site directed mutagenesis of miRNA binding site on the 3′-UTR of choline kinase alpha gene
by: Bnisallama, Faisal Fayez Saffah
Published: (2022)

Mutation K42R in Ribosomal Protein S12 Does Not Affect Susceptibility of Mycobacterium smegmatis 16S rRNA A-Site Mutants to 2-Deoxystreptamines
by: Hobbie, Sven N., et al.
Published: (2010)

mTOR phosphorylates IMP2 to promote IGF2 mRNA translation by internal ribosomal entry
by: Dai, Ning, et al.
Published: (2014)

Synthesis and processing of yeast precursor ribosomal RNA
by: , SANDE, Carolina Antonia Francisca Maria van der, et al.
Published: (1991)

Translation elongation factor 2 depletion by siRNA in mouse liver leads to mTOR-independent translational upregulation of ribosomal protein genes
by: Gerashchenko, Maxim V., et al.
Published: (2022)

Translation elongation factor 2 depletion by siRNA in mouse liver leads to mTOR-independent translational upregulation of ribosomal protein genes
by: Gerashchenko, Maxim V, et al.
Published: (2021)

Translocation and proteolysis by the energy-dependent protease ClpAP : coordination of conformational changes and active site chemistry
by: Jennings, Laura Danielle
Published: (2009)

Serine Catabolism by SHMT2 Is Required for Proper Mitochondrial Translation Initiation and Maintenance of Formylmethionyl-tRNAs
by: Sabatini, David M.
Published: (2020)

Translational regulation by short RNAs in mammalian cells
by: Petersen, Christian Paul
Published: (2008)

Impaired protein translation in Drosophila models for Charcot–Marie–Tooth neuropathy caused by mutant tRNA synthetases
by: Niehues, Sven, et al.
Published: (2015)

[superscript 19]F-labeling of the adenine H2-site to study large RNAs by NMR spectroscopy
by: Sochor, F., et al.
Published: (2016)

An internal ribosome entry site (IRES) mutant library for tuning expression level of multiple genes in mammalian cells
by: Koh, Esther Y. C., et al.
Published: (2015)

Identification of bona fide RNA editing sites: history, challenges, and opportunities
by: Tan, Meng How
Published: (2024)