Enhanced discrimination of DNA molecules in nanofluidic channels through multiple measurements

Author Manuscript 2013 March 21.

Bibliographic Details
Main Authors: Sen, Yi-Heng, Jain, Tarun Kumar, Aguilar, Carlos A., Karnik, Rohit
Other Authors: Lincoln Laboratory
Format: Article
Language:en_US
Published: Royal Society of Chemistry, The 2013
Online Access:http://hdl.handle.net/1721.1/78877
https://orcid.org/0000-0003-0588-9286
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author Sen, Yi-Heng
Jain, Tarun Kumar
Aguilar, Carlos A.
Karnik, Rohit
author2 Lincoln Laboratory
author_facet Lincoln Laboratory
Sen, Yi-Heng
Jain, Tarun Kumar
Aguilar, Carlos A.
Karnik, Rohit
author_sort Sen, Yi-Heng
collection MIT
description Author Manuscript 2013 March 21.
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spelling mit-1721.1/788772022-09-27T19:20:22Z Enhanced discrimination of DNA molecules in nanofluidic channels through multiple measurements Sen, Yi-Heng Jain, Tarun Kumar Aguilar, Carlos A. Karnik, Rohit Lincoln Laboratory Massachusetts Institute of Technology. Department of Mechanical Engineering Sen, Yi-Heng Jain, Tarun Kumar Aguilar, Carlos A. Karnik, Rohit Author Manuscript 2013 March 21. Nanofluidic sensing elements have been the focus of recent experiments for numerous applications ranging from nucleic acid fragment sizing to single-molecule DNA sequencing. These applications critically rely on high measurement fidelity, and methods to increase resolution are required. Herein, we describe fabrication and testing of a nanochannel device that enhances measurement resolution by performing multiple measurements (>100) on single DNA molecules. The enhanced measurement resolution enabled length discrimination between a mixture of λ-DNA (48.5 kbp) and T7 DNA (39.9 kbp) molecules, which were detected as transient current changes during translocation of the molecules through the nanochannel. As long DNA molecules are difficult to resolve quickly and with high fidelity with conventional electrophoresis, this approach may yield potentially portable, direct electrical sizing of DNA fragments with high sensitivity and resolution. National Institutes of Health (U.S.) (Grant R21EB009180) United States. Air Force (Contract FA8721-05-C- 0002) 2013-05-14T14:51:40Z 2013-05-14T14:51:40Z 2012-02 2011-08 Article http://purl.org/eprint/type/JournalArticle 1473-0197 1473-0189 http://hdl.handle.net/1721.1/78877 Sen, Yi-Heng, Tarun Jain, Carlos A. Aguilar, and Rohit Karnik. Enhanced Discrimination of DNA Molecules in Nanofluidic Channels through Multiple Measurements. Lab on a Chip 12(6): 1094, 2012. https://orcid.org/0000-0003-0588-9286 en_US http://dx.doi.org/10.1039/c2lc20771k Lab on a Chip Creative Commons Attribution-Noncommercial-Share Alike 3.0 http://creativecommons.org/licenses/by-nc-sa/3.0/ application/pdf Royal Society of Chemistry, The PubMed Central
spellingShingle Sen, Yi-Heng
Jain, Tarun Kumar
Aguilar, Carlos A.
Karnik, Rohit
Enhanced discrimination of DNA molecules in nanofluidic channels through multiple measurements
title Enhanced discrimination of DNA molecules in nanofluidic channels through multiple measurements
title_full Enhanced discrimination of DNA molecules in nanofluidic channels through multiple measurements
title_fullStr Enhanced discrimination of DNA molecules in nanofluidic channels through multiple measurements
title_full_unstemmed Enhanced discrimination of DNA molecules in nanofluidic channels through multiple measurements
title_short Enhanced discrimination of DNA molecules in nanofluidic channels through multiple measurements
title_sort enhanced discrimination of dna molecules in nanofluidic channels through multiple measurements
url http://hdl.handle.net/1721.1/78877
https://orcid.org/0000-0003-0588-9286
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AT aguilarcarlosa enhanceddiscriminationofdnamoleculesinnanofluidicchannelsthroughmultiplemeasurements
AT karnikrohit enhanceddiscriminationofdnamoleculesinnanofluidicchannelsthroughmultiplemeasurements