Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells
Many long noncoding RNA (lncRNA) species have been identified in mammalian cells, but the genomic origin and regulation of these molecules in individual cell types is poorly understood. We have generated catalogs of lncRNA species expressed in human and murine embryonic stem cells and mapped their g...
| Main Authors: | , , , , , , , , , , |
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| Format: | Article |
| Language: | en_US |
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National Academy of Sciences (U.S.)
2013
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| Online Access: | http://hdl.handle.net/1721.1/80396 https://orcid.org/0000-0003-1465-1691 https://orcid.org/0000-0001-8855-8647 |
| _version_ | 1826210470126682112 |
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| author | Almada, Albert Ernesto Lin, Charles Sharp, Phillip A. Young, Richard A. Sigova, Alla A. Mullen, Alan C. Molinie, Benoit Gupta, Sumeet Orlando, David A. Guenther, Matthew G. Giallourakis, Cosmas C. |
| author2 | Massachusetts Institute of Technology. Department of Biology |
| author_facet | Massachusetts Institute of Technology. Department of Biology Almada, Albert Ernesto Lin, Charles Sharp, Phillip A. Young, Richard A. Sigova, Alla A. Mullen, Alan C. Molinie, Benoit Gupta, Sumeet Orlando, David A. Guenther, Matthew G. Giallourakis, Cosmas C. |
| author_sort | Almada, Albert Ernesto |
| collection | MIT |
| description | Many long noncoding RNA (lncRNA) species have been identified in mammalian cells, but the genomic origin and regulation of these molecules in individual cell types is poorly understood. We have generated catalogs of lncRNA species expressed in human and murine embryonic stem cells and mapped their genomic origin. A surprisingly large fraction of these transcripts (>60%) originate from divergent transcription at promoters of active protein-coding genes. The divergently transcribed lncRNA/mRNA gene pairs exhibit coordinated changes in transcription when embryonic stem cells are differentiated into endoderm. Our results reveal that transcription of most lncRNA genes is coordinated with transcription of protein-coding genes. |
| first_indexed | 2024-09-23T14:50:24Z |
| format | Article |
| id | mit-1721.1/80396 |
| institution | Massachusetts Institute of Technology |
| language | en_US |
| last_indexed | 2024-09-23T14:50:24Z |
| publishDate | 2013 |
| publisher | National Academy of Sciences (U.S.) |
| record_format | dspace |
| spelling | mit-1721.1/803962022-10-01T22:49:18Z Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells Almada, Albert Ernesto Lin, Charles Sharp, Phillip A. Young, Richard A. Sigova, Alla A. Mullen, Alan C. Molinie, Benoit Gupta, Sumeet Orlando, David A. Guenther, Matthew G. Giallourakis, Cosmas C. Massachusetts Institute of Technology. Department of Biology Koch Institute for Integrative Cancer Research at MIT Almada, Albert Ernesto Lin, Charles Sharp, Phillip A. Young, Richard A. Many long noncoding RNA (lncRNA) species have been identified in mammalian cells, but the genomic origin and regulation of these molecules in individual cell types is poorly understood. We have generated catalogs of lncRNA species expressed in human and murine embryonic stem cells and mapped their genomic origin. A surprisingly large fraction of these transcripts (>60%) originate from divergent transcription at promoters of active protein-coding genes. The divergently transcribed lncRNA/mRNA gene pairs exhibit coordinated changes in transcription when embryonic stem cells are differentiated into endoderm. Our results reveal that transcription of most lncRNA genes is coordinated with transcription of protein-coding genes. National Institutes of Health (U.S.) (Grant HG002668) National Institutes of Health (U.S.) (Grant GM34277) National Cancer Institute (U.S.) (Cancer Center Support Grant P30-CA14051) 2013-09-11T16:42:55Z 2013-09-11T16:42:55Z 2013-02 2012-12 Article http://purl.org/eprint/type/JournalArticle 0027-8424 1091-6490 http://hdl.handle.net/1721.1/80396 Sigova, A. A., A. C. Mullen, B. Molinie, S. Gupta, D. A. Orlando, M. G. Guenther, A. E. Almada, et al. “Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells.” Proceedings of the National Academy of Sciences 110, no. 8 (February 19, 2013): 2876-2881. https://orcid.org/0000-0003-1465-1691 https://orcid.org/0000-0001-8855-8647 en_US http://dx.doi.org/10.1073/pnas.1221904110 Proceedings of the National Academy of Sciences Article is made available in accordance with the publisher's policy and may be subject to US copyright law. Please refer to the publisher's site for terms of use. application/pdf National Academy of Sciences (U.S.) PNAS |
| spellingShingle | Almada, Albert Ernesto Lin, Charles Sharp, Phillip A. Young, Richard A. Sigova, Alla A. Mullen, Alan C. Molinie, Benoit Gupta, Sumeet Orlando, David A. Guenther, Matthew G. Giallourakis, Cosmas C. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells |
| title | Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells |
| title_full | Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells |
| title_fullStr | Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells |
| title_full_unstemmed | Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells |
| title_short | Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells |
| title_sort | divergent transcription of long noncoding rna mrna gene pairs in embryonic stem cells |
| url | http://hdl.handle.net/1721.1/80396 https://orcid.org/0000-0003-1465-1691 https://orcid.org/0000-0001-8855-8647 |
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