Modeling temporally-regulated effects on distributions
Thesis: S.M. in Computer Science and Engineering, Massachusetts Institute of Technology, Department of Electrical Engineering and Computer Science, 2015.
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| Format: | Thesis |
| Language: | eng |
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Massachusetts Institute of Technology
2015
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| Online Access: | http://hdl.handle.net/1721.1/99857 |
| _version_ | 1811078793341698048 |
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| author | Mueller, Jonas Weylin |
| author2 | Tommi S. Jaakkola and David K. Gifford. |
| author_facet | Tommi S. Jaakkola and David K. Gifford. Mueller, Jonas Weylin |
| author_sort | Mueller, Jonas Weylin |
| collection | MIT |
| description | Thesis: S.M. in Computer Science and Engineering, Massachusetts Institute of Technology, Department of Electrical Engineering and Computer Science, 2015. |
| first_indexed | 2024-09-23T11:05:34Z |
| format | Thesis |
| id | mit-1721.1/99857 |
| institution | Massachusetts Institute of Technology |
| language | eng |
| last_indexed | 2024-09-23T11:05:34Z |
| publishDate | 2015 |
| publisher | Massachusetts Institute of Technology |
| record_format | dspace |
| spelling | mit-1721.1/998572019-04-10T07:47:57Z Modeling temporally-regulated effects on distributions Mueller, Jonas Weylin Tommi S. Jaakkola and David K. Gifford. Massachusetts Institute of Technology. Department of Electrical Engineering and Computer Science. Massachusetts Institute of Technology. Department of Electrical Engineering and Computer Science. Electrical Engineering and Computer Science. Thesis: S.M. in Computer Science and Engineering, Massachusetts Institute of Technology, Department of Electrical Engineering and Computer Science, 2015. Cataloged from PDF version of thesis. Includes bibliographical references (pages 75-79). We present a nonparametric framework for modeling an evolving sequence of (estimated) probability distributions which distinguishes the effects of sequential progression on the observed distribution from extraneous sources of noise (i.e. latent variables which perturb the distributions independently of the sequence-index). To discriminate between these two types of variation, our methods leverage the underlying assumption that the effects of sequential-progression follow a consistent trend. Our methods are motivated by the recent rise of single-cell RNA-sequencing time course experiments, in which an important analytic goal is the identification of genes relevant to the progression of a biological process of interest at cellular resolution. As existing statistical tools are not suited for this task, we introduce a new regression model for (ordinal-value , univariate-distribution) covariate-response pairs where the class of regression-functions reflects coherent changes to the distributions over increasing levels of the covariate, a concept we refer to as trends in distributions. Through simulation study and extensive application of our ideas to data from recent single-cell gene-expression time course experiments, we demonstrate numerous strengths of our framework. Finally, we characterize both theoretical properties of the proposed estimators and the generality of our trend-assumption across diverse types of underlying sequential-progression effects, thus highlighting the utility of our framework for a wide variety of other applications involving the analysis of distributions with associated ordinal labels. by Jonas Weylin Mueller. S.M. in Computer Science and Engineering 2015-11-09T19:53:26Z 2015-11-09T19:53:26Z 2015 2015 Thesis http://hdl.handle.net/1721.1/99857 927701697 eng M.I.T. theses are protected by copyright. They may be viewed from this source for any purpose, but reproduction or distribution in any format is prohibited without written permission. See provided URL for inquiries about permission. http://dspace.mit.edu/handle/1721.1/7582 97 pages application/pdf Massachusetts Institute of Technology |
| spellingShingle | Electrical Engineering and Computer Science. Mueller, Jonas Weylin Modeling temporally-regulated effects on distributions |
| title | Modeling temporally-regulated effects on distributions |
| title_full | Modeling temporally-regulated effects on distributions |
| title_fullStr | Modeling temporally-regulated effects on distributions |
| title_full_unstemmed | Modeling temporally-regulated effects on distributions |
| title_short | Modeling temporally-regulated effects on distributions |
| title_sort | modeling temporally regulated effects on distributions |
| topic | Electrical Engineering and Computer Science. |
| url | http://hdl.handle.net/1721.1/99857 |
| work_keys_str_mv | AT muellerjonasweylin modelingtemporallyregulatedeffectsondistributions |