Alternative splicing in human myeloid cell differentiation
Alternative splicing (AS) plays a pivotal role in the differentiation of immune cells and regulates immune responses. Dysregulations in splicing have been linked to abnormal cell function and can result in diseases. As splicing factors (SFs) are critical in AS, this project aims to understand the ro...
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| Format: | Final Year Project (FYP) |
| Language: | English |
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Nanyang Technological University
2022
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| Online Access: | https://hdl.handle.net/10356/163700 |
| _version_ | 1811684703053283328 |
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| author | Lee, Trena Wan Xuan |
| author2 | Francesc Xavier Roca Castella |
| author_facet | Francesc Xavier Roca Castella Lee, Trena Wan Xuan |
| author_sort | Lee, Trena Wan Xuan |
| collection | NTU |
| description | Alternative splicing (AS) plays a pivotal role in the differentiation of immune cells and regulates immune responses. Dysregulations in splicing have been linked to abnormal cell function and can result in diseases. As splicing factors (SFs) are critical in AS, this project aims to understand the role of RNA-binding motif protein 47 (RBM47), a SF, in myeloid cell differentiation. Human promyelocytic leukaemia (HL-60) cells were used as a model for monocyte-like and neutrophil-like differentiation. Differentially expressed genes (DEGs) and differential alternative splicing events
(DASEs) associated with RBM47 overexpression were identified from RNA sequencing data. RBM47 overexpression was observed to upregulate a large pool of DEGs when these cells were treated with vitamin D3. Six notable DEGs were selected for further experiments. Monocyte-differentiated HL-60 with overexpressed RBM47 had increased ROS production and surface expression of myeloid maturation and monocytic markers. DASEs were validated in three genes. Findings from this project suggest that RBM47 overexpression supports myeloid cell differentiation in HL-60, resulting in more mature myeloid phenotypes, though more work is required before conclusions can be drawn. |
| first_indexed | 2024-10-01T04:32:50Z |
| format | Final Year Project (FYP) |
| id | ntu-10356/163700 |
| institution | Nanyang Technological University |
| language | English |
| last_indexed | 2024-10-01T04:32:50Z |
| publishDate | 2022 |
| publisher | Nanyang Technological University |
| record_format | dspace |
| spelling | ntu-10356/1637002023-02-28T18:09:37Z Alternative splicing in human myeloid cell differentiation Lee, Trena Wan Xuan Francesc Xavier Roca Castella School of Biological Sciences xroca@ntu.edu.sg Science::Biological sciences Alternative splicing (AS) plays a pivotal role in the differentiation of immune cells and regulates immune responses. Dysregulations in splicing have been linked to abnormal cell function and can result in diseases. As splicing factors (SFs) are critical in AS, this project aims to understand the role of RNA-binding motif protein 47 (RBM47), a SF, in myeloid cell differentiation. Human promyelocytic leukaemia (HL-60) cells were used as a model for monocyte-like and neutrophil-like differentiation. Differentially expressed genes (DEGs) and differential alternative splicing events (DASEs) associated with RBM47 overexpression were identified from RNA sequencing data. RBM47 overexpression was observed to upregulate a large pool of DEGs when these cells were treated with vitamin D3. Six notable DEGs were selected for further experiments. Monocyte-differentiated HL-60 with overexpressed RBM47 had increased ROS production and surface expression of myeloid maturation and monocytic markers. DASEs were validated in three genes. Findings from this project suggest that RBM47 overexpression supports myeloid cell differentiation in HL-60, resulting in more mature myeloid phenotypes, though more work is required before conclusions can be drawn. Bachelor of Science in Biological Sciences 2022-12-14T12:21:34Z 2022-12-14T12:21:34Z 2022 Final Year Project (FYP) Lee, T. W. X. (2022). Alternative splicing in human myeloid cell differentiation. Final Year Project (FYP), Nanyang Technological University, Singapore. https://hdl.handle.net/10356/163700 https://hdl.handle.net/10356/163700 en application/pdf Nanyang Technological University |
| spellingShingle | Science::Biological sciences Lee, Trena Wan Xuan Alternative splicing in human myeloid cell differentiation |
| title | Alternative splicing in human myeloid cell differentiation |
| title_full | Alternative splicing in human myeloid cell differentiation |
| title_fullStr | Alternative splicing in human myeloid cell differentiation |
| title_full_unstemmed | Alternative splicing in human myeloid cell differentiation |
| title_short | Alternative splicing in human myeloid cell differentiation |
| title_sort | alternative splicing in human myeloid cell differentiation |
| topic | Science::Biological sciences |
| url | https://hdl.handle.net/10356/163700 |
| work_keys_str_mv | AT leetrenawanxuan alternativesplicinginhumanmyeloidcelldifferentiation |