Scientific visualization of DNA sequence matching in large-scale genomics sequencing
OligoSpawn is a Linux-based software package for DNA pattern discovery. OligoSpawn can be used to discover two types of oligos (short DNA patterns of 20-50 bases long), namely unique and popular oligos, from large databases of gene sequences. The purpose of this project is to add a GUI for OligoSpaw...
| Main Author: | |
|---|---|
| Other Authors: | |
| Format: | Final Year Project (FYP) |
| Language: | English |
| Published: |
2013
|
| Subjects: | |
| Online Access: | http://hdl.handle.net/10356/51992 |
| _version_ | 1811677511470284800 |
|---|---|
| author | Raina, Priyanka |
| author2 | School of Computer Engineering |
| author_facet | School of Computer Engineering Raina, Priyanka |
| author_sort | Raina, Priyanka |
| collection | NTU |
| description | OligoSpawn is a Linux-based software package for DNA pattern discovery. OligoSpawn can be used to discover two types of oligos (short DNA patterns of 20-50 bases long), namely unique and popular oligos, from large databases of gene sequences. The purpose of this project is to add a GUI for OligoSpawn, and then extend the OligoSpawn GUI to visualize the mapping of large numbers of short DNA reads from next-generation sequencing (NGS) to reference genomes. The GUI is being constructed in Python using PyPE as the IDE, wxpython as the GUI-building toolkit and Swig to wrap around the C and C++ based backend code. The report is segmented into three major sections: Overview of the software and concepts utilized; Techniques employed during implementation and the Final results. |
| first_indexed | 2024-10-01T02:38:32Z |
| format | Final Year Project (FYP) |
| id | ntu-10356/51992 |
| institution | Nanyang Technological University |
| language | English |
| last_indexed | 2024-10-01T02:38:32Z |
| publishDate | 2013 |
| record_format | dspace |
| spelling | ntu-10356/519922023-03-03T20:29:22Z Scientific visualization of DNA sequence matching in large-scale genomics sequencing Raina, Priyanka School of Computer Engineering Zheng Jie DRNTU::Engineering::Computer science and engineering::Information systems::Information interfaces and presentation OligoSpawn is a Linux-based software package for DNA pattern discovery. OligoSpawn can be used to discover two types of oligos (short DNA patterns of 20-50 bases long), namely unique and popular oligos, from large databases of gene sequences. The purpose of this project is to add a GUI for OligoSpawn, and then extend the OligoSpawn GUI to visualize the mapping of large numbers of short DNA reads from next-generation sequencing (NGS) to reference genomes. The GUI is being constructed in Python using PyPE as the IDE, wxpython as the GUI-building toolkit and Swig to wrap around the C and C++ based backend code. The report is segmented into three major sections: Overview of the software and concepts utilized; Techniques employed during implementation and the Final results. Bachelor of Engineering (Computer Science) 2013-04-19T02:48:38Z 2013-04-19T02:48:38Z 2013 2013 Final Year Project (FYP) http://hdl.handle.net/10356/51992 en Nanyang Technological University 65 p. application/pdf |
| spellingShingle | DRNTU::Engineering::Computer science and engineering::Information systems::Information interfaces and presentation Raina, Priyanka Scientific visualization of DNA sequence matching in large-scale genomics sequencing |
| title | Scientific visualization of DNA sequence matching in large-scale genomics sequencing |
| title_full | Scientific visualization of DNA sequence matching in large-scale genomics sequencing |
| title_fullStr | Scientific visualization of DNA sequence matching in large-scale genomics sequencing |
| title_full_unstemmed | Scientific visualization of DNA sequence matching in large-scale genomics sequencing |
| title_short | Scientific visualization of DNA sequence matching in large-scale genomics sequencing |
| title_sort | scientific visualization of dna sequence matching in large scale genomics sequencing |
| topic | DRNTU::Engineering::Computer science and engineering::Information systems::Information interfaces and presentation |
| url | http://hdl.handle.net/10356/51992 |
| work_keys_str_mv | AT rainapriyanka scientificvisualizationofdnasequencematchinginlargescalegenomicssequencing |