Visualizing multi-faceted functional decomposition of protein interaction networks (FACETS)
Through the studies of the technical background of FACETS, FACETS Viewer was proposed in order to provide a user interface (UI) to visualize the protein interaction network. The key requirements of the software have been clearly stated, which requires re-designing user experience (UX). The visualiza...
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| Other Authors: | |
| Format: | Final Year Project (FYP) |
| Language: | English |
| Published: |
2015
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| Online Access: | http://hdl.handle.net/10356/63186 |
| _version_ | 1826115547552546816 |
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| author | Chen, Mengxuan |
| author2 | Sourav Saha Bhowmick |
| author_facet | Sourav Saha Bhowmick Chen, Mengxuan |
| author_sort | Chen, Mengxuan |
| collection | NTU |
| description | Through the studies of the technical background of FACETS, FACETS Viewer was proposed in order to provide a user interface (UI) to visualize the protein interaction network. The key requirements of the software have been clearly stated, which requires re-designing user experience (UX). The visualization schemes were introduced accordingly. Not only were the UI components and layout considered, but the coloring methodology was also taken into account. In order to further implement the software, architectural design has been finalized and implementation details have been clarified, including the use of Gephi Toolkit package and Java Swing widget toolkit. Moreover, series of experiments were conducted across different network files to measure the performance of FACETS Viewer with different rendering configurations. Besides the technical details, a walkthrough for the software demonstrates an easy-to-follow workflow and its user-friendly interface. Finally, based on the experimental results, conclusions were given to summarize the project and recommendations were provided to suggest possible future improvement. |
| first_indexed | 2024-10-01T03:56:58Z |
| format | Final Year Project (FYP) |
| id | ntu-10356/63186 |
| institution | Nanyang Technological University |
| language | English |
| last_indexed | 2024-10-01T03:56:58Z |
| publishDate | 2015 |
| record_format | dspace |
| spelling | ntu-10356/631862023-03-03T20:58:24Z Visualizing multi-faceted functional decomposition of protein interaction networks (FACETS) Chen, Mengxuan Sourav Saha Bhowmick School of Computer Engineering DRNTU::Engineering::Computer science and engineering::Computer applications::Life and medical sciences Through the studies of the technical background of FACETS, FACETS Viewer was proposed in order to provide a user interface (UI) to visualize the protein interaction network. The key requirements of the software have been clearly stated, which requires re-designing user experience (UX). The visualization schemes were introduced accordingly. Not only were the UI components and layout considered, but the coloring methodology was also taken into account. In order to further implement the software, architectural design has been finalized and implementation details have been clarified, including the use of Gephi Toolkit package and Java Swing widget toolkit. Moreover, series of experiments were conducted across different network files to measure the performance of FACETS Viewer with different rendering configurations. Besides the technical details, a walkthrough for the software demonstrates an easy-to-follow workflow and its user-friendly interface. Finally, based on the experimental results, conclusions were given to summarize the project and recommendations were provided to suggest possible future improvement. Bachelor of Engineering (Computer Science) 2015-05-11T01:56:25Z 2015-05-11T01:56:25Z 2015 2015 Final Year Project (FYP) http://hdl.handle.net/10356/63186 en Nanyang Technological University 61 p. application/pdf |
| spellingShingle | DRNTU::Engineering::Computer science and engineering::Computer applications::Life and medical sciences Chen, Mengxuan Visualizing multi-faceted functional decomposition of protein interaction networks (FACETS) |
| title | Visualizing multi-faceted functional decomposition of protein interaction networks (FACETS) |
| title_full | Visualizing multi-faceted functional decomposition of protein interaction networks (FACETS) |
| title_fullStr | Visualizing multi-faceted functional decomposition of protein interaction networks (FACETS) |
| title_full_unstemmed | Visualizing multi-faceted functional decomposition of protein interaction networks (FACETS) |
| title_short | Visualizing multi-faceted functional decomposition of protein interaction networks (FACETS) |
| title_sort | visualizing multi faceted functional decomposition of protein interaction networks facets |
| topic | DRNTU::Engineering::Computer science and engineering::Computer applications::Life and medical sciences |
| url | http://hdl.handle.net/10356/63186 |
| work_keys_str_mv | AT chenmengxuan visualizingmultifacetedfunctionaldecompositionofproteininteractionnetworksfacets |