Phylogeny of sea cucumber (Echinodermata: Holothuroidea) as inferred from 16S mitochondrial rRNA gene sequences
This study aimed to determine phylogenetic relationship between and among selected species of sea cucumbers (Echinodermata: Holothuroidea) using 16S mitochondrial ribosomal RNA (rRNA) gene. Phylogenetic analyses of 37 partial sequences of 16S mitochondrial rRNA gene using three main methods namely n...
| Những tác giả chính: | , , |
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| Định dạng: | Bài viết |
| Ngôn ngữ: | English |
| Được phát hành: |
Penerbit UKM
2010
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| Những chủ đề: | |
| Truy cập trực tuyến: | http://irep.iium.edu.my/10708/1/08_Kamarul_Rahim.pdf |
| _version_ | 1825645188760993792 |
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| author | Kamarudin, Kamarul Rahim Hashim, Ridzwan Usup, Gires |
| author_facet | Kamarudin, Kamarul Rahim Hashim, Ridzwan Usup, Gires |
| author_sort | Kamarudin, Kamarul Rahim |
| collection | IIUM |
| description | This study aimed to determine phylogenetic relationship between and among selected species of sea cucumbers (Echinodermata: Holothuroidea) using 16S mitochondrial ribosomal RNA (rRNA) gene. Phylogenetic analyses of 37 partial sequences of 16S mitochondrial rRNA gene using three main methods namely neighbour joining (NJ), maximum parsimony (MP) and maximum likelihood (ML) showed the presence of five main genera of sea cucumbers: Molpadia from order Molpadiida and four genera of order Aspidochirotida namely Holothuria, Stichopus, Bohadschia and Actinopyga. All of the 17 species obtained from Malaysia distributed among the main genera except within Interestingly, Holothuria excellens was out of Holothuria group causing Holothuria to be paraphyletic. High bootstrap value and consistent clustering made Molpadia, Stichopus, Bohadschia and Actinopyga monophyletic. The relationship of with the other genera was unclarified and Stichopus was sister to Molpadia. The latter finding caused the resolution at order level unclear. The pairwise genetic distance calculated using Kimura 2-parameter model further supported and verified findings from the phylogenetic trees. Further studies with more samples and different mitochondrial DNA genes need to be done to get a better view and verification on the molecular phylogeny of sea cucumbers.
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| first_indexed | 2024-03-05T22:43:57Z |
| format | Article |
| id | oai:generic.eprints.org:10708 |
| institution | International Islamic University Malaysia |
| language | English |
| last_indexed | 2024-03-05T22:43:57Z |
| publishDate | 2010 |
| publisher | Penerbit UKM |
| record_format | dspace |
| spelling | oai:generic.eprints.org:107082011-12-20T00:25:10Z http://irep.iium.edu.my/10708/ Phylogeny of sea cucumber (Echinodermata: Holothuroidea) as inferred from 16S mitochondrial rRNA gene sequences Kamarudin, Kamarul Rahim Hashim, Ridzwan Usup, Gires RS Pharmacy and materia medica SH Aquaculture. Fisheries. Angling This study aimed to determine phylogenetic relationship between and among selected species of sea cucumbers (Echinodermata: Holothuroidea) using 16S mitochondrial ribosomal RNA (rRNA) gene. Phylogenetic analyses of 37 partial sequences of 16S mitochondrial rRNA gene using three main methods namely neighbour joining (NJ), maximum parsimony (MP) and maximum likelihood (ML) showed the presence of five main genera of sea cucumbers: Molpadia from order Molpadiida and four genera of order Aspidochirotida namely Holothuria, Stichopus, Bohadschia and Actinopyga. All of the 17 species obtained from Malaysia distributed among the main genera except within Interestingly, Holothuria excellens was out of Holothuria group causing Holothuria to be paraphyletic. High bootstrap value and consistent clustering made Molpadia, Stichopus, Bohadschia and Actinopyga monophyletic. The relationship of with the other genera was unclarified and Stichopus was sister to Molpadia. The latter finding caused the resolution at order level unclear. The pairwise genetic distance calculated using Kimura 2-parameter model further supported and verified findings from the phylogenetic trees. Further studies with more samples and different mitochondrial DNA genes need to be done to get a better view and verification on the molecular phylogeny of sea cucumbers. Penerbit UKM 2010 Article PeerReviewed application/pdf en http://irep.iium.edu.my/10708/1/08_Kamarul_Rahim.pdf Kamarudin, Kamarul Rahim and Hashim, Ridzwan and Usup, Gires (2010) Phylogeny of sea cucumber (Echinodermata: Holothuroidea) as inferred from 16S mitochondrial rRNA gene sequences. Sains Malaysiana, 39 (2). pp. 209-218. ISSN 0126-6039 http://pkukmweb.ukm.my/~jsm/pdf_files/SM-PDF-39-2-2010/08%20Kamarul%20Rahim.pdf |
| spellingShingle | RS Pharmacy and materia medica SH Aquaculture. Fisheries. Angling Kamarudin, Kamarul Rahim Hashim, Ridzwan Usup, Gires Phylogeny of sea cucumber (Echinodermata: Holothuroidea) as inferred from 16S mitochondrial rRNA gene sequences |
| title | Phylogeny of sea cucumber (Echinodermata: Holothuroidea)
as inferred from 16S mitochondrial rRNA gene sequences |
| title_full | Phylogeny of sea cucumber (Echinodermata: Holothuroidea)
as inferred from 16S mitochondrial rRNA gene sequences |
| title_fullStr | Phylogeny of sea cucumber (Echinodermata: Holothuroidea)
as inferred from 16S mitochondrial rRNA gene sequences |
| title_full_unstemmed | Phylogeny of sea cucumber (Echinodermata: Holothuroidea)
as inferred from 16S mitochondrial rRNA gene sequences |
| title_short | Phylogeny of sea cucumber (Echinodermata: Holothuroidea)
as inferred from 16S mitochondrial rRNA gene sequences |
| title_sort | phylogeny of sea cucumber echinodermata holothuroidea as inferred from 16s mitochondrial rrna gene sequences |
| topic | RS Pharmacy and materia medica SH Aquaculture. Fisheries. Angling |
| url | http://irep.iium.edu.my/10708/1/08_Kamarul_Rahim.pdf |
| work_keys_str_mv | AT kamarudinkamarulrahim phylogenyofseacucumberechinodermataholothuroideaasinferredfrom16smitochondrialrrnagenesequences AT hashimridzwan phylogenyofseacucumberechinodermataholothuroideaasinferredfrom16smitochondrialrrnagenesequences AT usupgires phylogenyofseacucumberechinodermataholothuroideaasinferredfrom16smitochondrialrrnagenesequences |