Phylogenetic analysis of Macroglossus Sobrinus from Peninsular Malaysia
A study on the phylogeneticso f Mocroglossuss obrinus( GreaterL ong-nosedF ruit Bat)from Peninsular Malaysia was done using partial cytochrome b (cyt-b) mitochondrial DNA (mtDNA)g ene.T he specimenso f M. sobrinusw ere collectedf rom Kedah( WengU lu Muda ForestR eserve)P, erak( BintangF orestR eser...
| Main Authors: | , , , |
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| Format: | Book Chapter |
| Language: | English |
| Published: |
Department of Wildlife and National Parks Peninsular Malaysia
2008
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| Subjects: | |
| Online Access: | http://irep.iium.edu.my/12716/1/2008_PERHILITAN_Book_Fauzan_Kamarul_M.sobrinus.pdf |
| _version_ | 1796875999179177984 |
|---|---|
| author | Fauzan Ahmad, Hajar Japning, Jeffrine Rovie Ryon Senawi, Juliana Kamarudin, Kamarul Rahim |
| author_facet | Fauzan Ahmad, Hajar Japning, Jeffrine Rovie Ryon Senawi, Juliana Kamarudin, Kamarul Rahim |
| author_sort | Fauzan Ahmad, Hajar |
| collection | IIUM |
| description | A study on the phylogeneticso f Mocroglossuss obrinus( GreaterL ong-nosedF ruit Bat)from Peninsular Malaysia was done using partial cytochrome b (cyt-b) mitochondrial DNA
(mtDNA)g ene.T he specimenso f M. sobrinusw ere collectedf rom Kedah( WengU lu Muda ForestR eserve)P, erak( BintangF orestR eserve)s, elangor( Ulu Langat),M elaka (Asahan
Catchment Area), Johor (Gunung Ledang), Kelantan (Gua Musang), and pahang (Krau WildlifeR eserve)T. hirty ninec yt-bs equencesin cludinge ighteens equenceso f M. sobrinus,
twenty sequenceso f M. minimust aken from the GenBanka, nd a sequenceo f Penthetor /ucosi( Lucas'sS hort-nosedF ruit Bat) as an outgroup were incorporatedi n the analyses.
Three main methods namely neighbourj oining (NJ) ,m aximum parsimony( Mp) , and maximuml ikelihood( ML) were usedi n the phylogenetictr ees reconstructionfo llowed by the consensusp hylogenetictr ee to summarizet he overallf indings.T he four trees were reconstructedto determinet he geneticr elationshipb etweenM . sobrinusa ndM . minimus.
Generallyt,h e trees indicatedg eneticd ivergenceb etweenp opulationso f M. sobrinus.The resultw as fur,thers upportedb y very low geneticd istancesb asedo n Kimura2 -parameter distance( 1980)c alculationT. herew as an individuaol f M. sobrinus( GuaM usang,K elantan)
55 clusteredw ith the M. minimus individualst,h us indicatingo f possiblem isidentification. Apart from that, M. sobrinusf rom Kelantang avet he highestn ucleotided iversity,P 1(J ukes & Cantor1 969)w ith 0,65%,f ollowed by Perak( 0.36%),K edah( 0.27%)S, elangor( 0.78%1,
and finally Pahang and Melaka with no nucleotide diversity. Overall, the nucleotide diversityo f M. sobrinusi n PeninsularM alaysiaw as 0.29%i ndicatingl ow level of genetic diversity. However, the sample size is too small to relate the results with the phylogeography and population genetic views. Therefore, more extensive studies
incorporatingo ther mtDNAg enesw ith higherr ate of evolutions ucha s control regiong ene are highlyr ecommendedin the futures tudV |
| first_indexed | 2024-03-05T22:46:17Z |
| format | Book Chapter |
| id | oai:generic.eprints.org:12716 |
| institution | International Islamic University Malaysia |
| language | English |
| last_indexed | 2024-03-05T22:46:17Z |
| publishDate | 2008 |
| publisher | Department of Wildlife and National Parks Peninsular Malaysia |
| record_format | dspace |
| spelling | oai:generic.eprints.org:127162014-01-11T22:17:33Z http://irep.iium.edu.my/12716/ Phylogenetic analysis of Macroglossus Sobrinus from Peninsular Malaysia Fauzan Ahmad, Hajar Japning, Jeffrine Rovie Ryon Senawi, Juliana Kamarudin, Kamarul Rahim QL Zoology A study on the phylogeneticso f Mocroglossuss obrinus( GreaterL ong-nosedF ruit Bat)from Peninsular Malaysia was done using partial cytochrome b (cyt-b) mitochondrial DNA (mtDNA)g ene.T he specimenso f M. sobrinusw ere collectedf rom Kedah( WengU lu Muda ForestR eserve)P, erak( BintangF orestR eserve)s, elangor( Ulu Langat),M elaka (Asahan Catchment Area), Johor (Gunung Ledang), Kelantan (Gua Musang), and pahang (Krau WildlifeR eserve)T. hirty ninec yt-bs equencesin cludinge ighteens equenceso f M. sobrinus, twenty sequenceso f M. minimust aken from the GenBanka, nd a sequenceo f Penthetor /ucosi( Lucas'sS hort-nosedF ruit Bat) as an outgroup were incorporatedi n the analyses. Three main methods namely neighbourj oining (NJ) ,m aximum parsimony( Mp) , and maximuml ikelihood( ML) were usedi n the phylogenetictr ees reconstructionfo llowed by the consensusp hylogenetictr ee to summarizet he overallf indings.T he four trees were reconstructedto determinet he geneticr elationshipb etweenM . sobrinusa ndM . minimus. Generallyt,h e trees indicatedg eneticd ivergenceb etweenp opulationso f M. sobrinus.The resultw as fur,thers upportedb y very low geneticd istancesb asedo n Kimura2 -parameter distance( 1980)c alculationT. herew as an individuaol f M. sobrinus( GuaM usang,K elantan) 55 clusteredw ith the M. minimus individualst,h us indicatingo f possiblem isidentification. Apart from that, M. sobrinusf rom Kelantang avet he highestn ucleotided iversity,P 1(J ukes & Cantor1 969)w ith 0,65%,f ollowed by Perak( 0.36%),K edah( 0.27%)S, elangor( 0.78%1, and finally Pahang and Melaka with no nucleotide diversity. Overall, the nucleotide diversityo f M. sobrinusi n PeninsularM alaysiaw as 0.29%i ndicatingl ow level of genetic diversity. However, the sample size is too small to relate the results with the phylogeography and population genetic views. Therefore, more extensive studies incorporatingo ther mtDNAg enesw ith higherr ate of evolutions ucha s control regiong ene are highlyr ecommendedin the futures tudV Department of Wildlife and National Parks Peninsular Malaysia 2008 Book Chapter PeerReviewed application/pdf en http://irep.iium.edu.my/12716/1/2008_PERHILITAN_Book_Fauzan_Kamarul_M.sobrinus.pdf Fauzan Ahmad, Hajar and Japning, Jeffrine Rovie Ryon and Senawi, Juliana and Kamarudin, Kamarul Rahim (2008) Phylogenetic analysis of Macroglossus Sobrinus from Peninsular Malaysia. In: Biodiversity Resources and Conservation Status in Peninsular Malaysia. Department of Wildlife and National Parks Peninsular Malaysia, Kuala Lumpur, pp. 55-65. ISBN 978-983-44181-3-7 http://www.wildlife.gov.my/ |
| spellingShingle | QL Zoology Fauzan Ahmad, Hajar Japning, Jeffrine Rovie Ryon Senawi, Juliana Kamarudin, Kamarul Rahim Phylogenetic analysis of Macroglossus Sobrinus from Peninsular Malaysia |
| title | Phylogenetic analysis of Macroglossus Sobrinus from Peninsular Malaysia |
| title_full | Phylogenetic analysis of Macroglossus Sobrinus from Peninsular Malaysia |
| title_fullStr | Phylogenetic analysis of Macroglossus Sobrinus from Peninsular Malaysia |
| title_full_unstemmed | Phylogenetic analysis of Macroglossus Sobrinus from Peninsular Malaysia |
| title_short | Phylogenetic analysis of Macroglossus Sobrinus from Peninsular Malaysia |
| title_sort | phylogenetic analysis of macroglossus sobrinus from peninsular malaysia |
| topic | QL Zoology |
| url | http://irep.iium.edu.my/12716/1/2008_PERHILITAN_Book_Fauzan_Kamarul_M.sobrinus.pdf |
| work_keys_str_mv | AT fauzanahmadhajar phylogeneticanalysisofmacroglossussobrinusfrompeninsularmalaysia AT japningjeffrinerovieryon phylogeneticanalysisofmacroglossussobrinusfrompeninsularmalaysia AT senawijuliana phylogeneticanalysisofmacroglossussobrinusfrompeninsularmalaysia AT kamarudinkamarulrahim phylogeneticanalysisofmacroglossussobrinusfrompeninsularmalaysia |