New Report: Genome Mining Untaps the Antibiotics Biosynthetic Gene Cluster of Pseudoalteromonas xiamenensis STKMTI.2 from a Mangrove Soil Sediment
The marine bacterium Pseudoalteromonas xiamenensis STKMTI.2 was isolated from a mangrove soil sediment on Setokok Island, Batam, Indonesia. The genome of this bacterium consisted of 4,563,326 bp (GC content: 43.2) with 1 chromosome, 2 circular plasmids, 2 linear plasmids, 4,824 protein-coding sequen...
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| Aineistotyyppi: | Artikkeli |
| Kieli: | English |
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Springer
2022
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| Linkit: | https://repository.ugm.ac.id/283361/1/s10126-022-10096-1.pdf |
| _version_ | 1826050633243820032 |
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| author | Handayani, Desy Putri Isnansetyo, Alim Istiqomah, Indah Jumina, Jumina |
| author_facet | Handayani, Desy Putri Isnansetyo, Alim Istiqomah, Indah Jumina, Jumina |
| author_sort | Handayani, Desy Putri |
| collection | UGM |
| description | The marine bacterium Pseudoalteromonas xiamenensis STKMTI.2 was isolated from a mangrove soil sediment on Setokok Island, Batam, Indonesia. The genome of this bacterium consisted of 4,563,326 bp (GC content: 43.2) with 1 chromosome, 2 circular plasmids, 2 linear plasmids, 4,824 protein-coding sequences, 25 rRNAs, 104 tRNAs, 4 ncRNAs, and 1 clustered, regularly interspaced, short palindromic repeated (CRISPR). This strain possessed cluster genes which are responsible for the production of brominated marine pyrroles/phenols (bmp), namely, bmp8 and bmp9. Other gene clusters responsible for the synthesis of secondary metabolites were identified using antiSMASH and BAGEL4, which yielded five results, namely, non-ribosomal peptides, polyketide-like butyrolactone, Lant class I, and RiPP-like, detected in chromosome 1, while prodigiosin was detected in the unnamed plasmid 5. This suggests that these whole genome data will be of remarkable importance for the improved understanding of the biosynthesis of industrially important bioactive and antibacterial compounds produced by P. xiamenensis STKMTI.2. © 2022, The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature. |
| first_indexed | 2024-03-14T00:07:39Z |
| format | Article |
| id | oai:generic.eprints.org:283361 |
| institution | Universiti Gadjah Mada |
| language | English |
| last_indexed | 2024-03-14T00:07:39Z |
| publishDate | 2022 |
| publisher | Springer |
| record_format | dspace |
| spelling | oai:generic.eprints.org:2833612023-11-20T07:38:54Z https://repository.ugm.ac.id/283361/ New Report: Genome Mining Untaps the Antibiotics Biosynthetic Gene Cluster of Pseudoalteromonas xiamenensis STKMTI.2 from a Mangrove Soil Sediment Handayani, Desy Putri Isnansetyo, Alim Istiqomah, Indah Jumina, Jumina Aquaculture Fisheries Sciences The marine bacterium Pseudoalteromonas xiamenensis STKMTI.2 was isolated from a mangrove soil sediment on Setokok Island, Batam, Indonesia. The genome of this bacterium consisted of 4,563,326 bp (GC content: 43.2) with 1 chromosome, 2 circular plasmids, 2 linear plasmids, 4,824 protein-coding sequences, 25 rRNAs, 104 tRNAs, 4 ncRNAs, and 1 clustered, regularly interspaced, short palindromic repeated (CRISPR). This strain possessed cluster genes which are responsible for the production of brominated marine pyrroles/phenols (bmp), namely, bmp8 and bmp9. Other gene clusters responsible for the synthesis of secondary metabolites were identified using antiSMASH and BAGEL4, which yielded five results, namely, non-ribosomal peptides, polyketide-like butyrolactone, Lant class I, and RiPP-like, detected in chromosome 1, while prodigiosin was detected in the unnamed plasmid 5. This suggests that these whole genome data will be of remarkable importance for the improved understanding of the biosynthesis of industrially important bioactive and antibacterial compounds produced by P. xiamenensis STKMTI.2. © 2022, The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature. Springer 2022 Article PeerReviewed application/pdf en https://repository.ugm.ac.id/283361/1/s10126-022-10096-1.pdf Handayani, Desy Putri and Isnansetyo, Alim and Istiqomah, Indah and Jumina, Jumina (2022) New Report: Genome Mining Untaps the Antibiotics Biosynthetic Gene Cluster of Pseudoalteromonas xiamenensis STKMTI.2 from a Mangrove Soil Sediment. Marine Biotechnology, 24 (1). 190 – 202. https://www.scopus.com/inward/record.uri?eid=2-s2.0-85124710924&doi=10.1007%2fs10126-022-10096-1&partnerID=40&md5=f99645dd945f58144b84a99098bac0cd |
| spellingShingle | Aquaculture Fisheries Sciences Handayani, Desy Putri Isnansetyo, Alim Istiqomah, Indah Jumina, Jumina New Report: Genome Mining Untaps the Antibiotics Biosynthetic Gene Cluster of Pseudoalteromonas xiamenensis STKMTI.2 from a Mangrove Soil Sediment |
| title | New Report: Genome Mining Untaps the Antibiotics Biosynthetic Gene Cluster of Pseudoalteromonas xiamenensis STKMTI.2 from a Mangrove Soil Sediment |
| title_full | New Report: Genome Mining Untaps the Antibiotics Biosynthetic Gene Cluster of Pseudoalteromonas xiamenensis STKMTI.2 from a Mangrove Soil Sediment |
| title_fullStr | New Report: Genome Mining Untaps the Antibiotics Biosynthetic Gene Cluster of Pseudoalteromonas xiamenensis STKMTI.2 from a Mangrove Soil Sediment |
| title_full_unstemmed | New Report: Genome Mining Untaps the Antibiotics Biosynthetic Gene Cluster of Pseudoalteromonas xiamenensis STKMTI.2 from a Mangrove Soil Sediment |
| title_short | New Report: Genome Mining Untaps the Antibiotics Biosynthetic Gene Cluster of Pseudoalteromonas xiamenensis STKMTI.2 from a Mangrove Soil Sediment |
| title_sort | new report genome mining untaps the antibiotics biosynthetic gene cluster of pseudoalteromonas xiamenensis stkmti 2 from a mangrove soil sediment |
| topic | Aquaculture Fisheries Sciences |
| url | https://repository.ugm.ac.id/283361/1/s10126-022-10096-1.pdf |
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