The effect of scale-free topology on the robustness and evolvability of genetic regulatory networks.

The effect of scale-free topology on the robustness and evolvability of genetic regulatory networks.

We investigate how scale-free (SF) and Erdos-Renyi (ER) topologies affect the interplay between evolvability and robustness of model gene regulatory networks with Boolean threshold dynamics. In agreement with Oikonomou and Cluzel (2006) we find that networks with SF(in) topologies, that is SF topolo...

Πλήρης περιγραφή

Λεπτομέρειες βιβλιογραφικής εγγραφής
Κύριοι συγγραφείς:	Greenbury, S, Johnston, I, Smith, M, Doye, J, Louis, A
Μορφή:	Journal article
Γλώσσα:	English
Έκδοση:	Elsevier 2010

Παρόμοια τεκμήρια

Genetic Correlations Greatly Increase Mutational Robustness and Can Both Reduce and Enhance Evolvability.
ανά: Sam F Greenbury, κ.ά.
Έκδοση: (2016-03-01)

Robustness can evolve gradually in complex regulatory gene networks with varying topology.
ανά: Stefano Ciliberti, κ.ά.
Έκδοση: (2007-02-01)

Evolving robust gene regulatory networks.
ανά: Nasimul Noman, κ.ά.
Έκδοση: (2015-01-01)

Network topology of a potential energy landscape: a static scale-free network.
ανά: Doye, J
Έκδοση: (2002)

On the contributions of topological features to transcriptional regulatory network robustness
ανά: Zamal Faiyaz Al, κ.ά.
Έκδοση: (2012-11-01)

The effect of topology on the structure and free energy landscape of DNA kissing complexes.
ανά: Romano, F, κ.ά.
Έκδοση: (2012)

Topological Vulnerability of Evolving Networks
ανά: Nikolay Aleksandrovich Kinash, κ.ά.
Έκδοση: (2015-03-01)

Scarcity of scale-free topology is universal across biochemical networks
ανά: Harrison B. Smith, κ.ά.
Έκδοση: (2021-03-01)

Rank-based edge reconstruction for scale-free genetic regulatory networks
ανά: Almasri Eyad, κ.ά.
Έκδοση: (2008-01-01)

Identification of a topological characteristic responsible for the biological robustness of regulatory networks.
ανά: Yangle Wu, κ.ά.
Έκδοση: (2009-07-01)

Controlling directed networks with evolving topologies
ανά: Li, Guoqi, κ.ά.
Έκδοση: (2021)

Energy landscapes, scale-free networks and Apollonian packings
ανά: Doye, J, κ.ά.
Έκδοση: (2006)

Robust genetic codes enhance protein evolvability.
ανά: Hana Rozhoňová, κ.ά.
Έκδοση: (2024-05-01)

Evolution of evolvability in gene regulatory networks.
ανά: Anton Crombach, κ.ά.
Έκδοση: (2008-07-01)

Robustness and evolvability of the human signaling network.
ανά: Junil Kim, κ.ά.
Έκδοση: (2014-07-01)

Entropy as a Robustness Marker in Genetic Regulatory Networks
ανά: Mustapha Rachdi, κ.ά.
Έκδοση: (2020-02-01)

Environmental noise, genetic diversity and the evolution of evolvability and robustness in model gene networks.
ανά: Christopher F Steiner
Έκδοση: (2012-01-01)

Interrogating the topological robustness of gene regulatory circuits by randomization.
ανά: Bin Huang, κ.ά.
Έκδοση: (2017-03-01)

Self-similar disk packings as model spatial scale-free networks.
ανά: Doye, J, κ.ά.
Έκδοση: (2005)

Symmetry and simplicity spontaneously emerge from the algorithmic nature of evolution
ανά: Johnston, IG, κ.ά.
Έκδοση: (2022)

Reply to Ocklenburg and Mundorf: the interplay of developmental bias and natural selection
ανά: Johnston, IG, κ.ά.
Έκδοση: (2022)

Are scale-free networks robust to measurement errors?
ανά: Zhao Hongyu, κ.ά.
Έκδοση: (2005-05-01)

Conflicting effects of recombination on the evolvability and robustness in neutrally evolving populations.
ανά: Alexander Klug, κ.ά.
Έκδοση: (2022-11-01)

Temporal-topological properties of higher-order evolving networks
ανά: Alberto Ceria, κ.ά.
Έκδοση: (2023-04-01)

Onset of Small-World Behavior in Topologically Evolving Networks
ανά: D. E. Juanico, κ.ά.
Έκδοση: (2003-06-01)

A tractable genotype-phenotype map modelling the self-assembly of protein quaternary structure.
ανά: Greenbury, S, κ.ά.
Έκδοση: (2014)

Genetic code robustness and protein evolvability are correlated and protein-specific.
ανά: Brian P H Metzger
Έκδοση: (2024-05-01)

Scale free topology as an effective feedback system.
ανά: Alexander Rivkind, κ.ά.
Έκδοση: (2020-05-01)

Regulatory networks may evolve to favor adaptive foresight.
ανά: Alejandro Couce
Έκδοση: (2024-12-01)

Genetically modified organisms: adapting regulatory frameworks for evolving genome editing technologies
ανά: Pablo Rozas, κ.ά.
Έκδοση: (2022-10-01)

Characterizing the network topology of the energy landscapes of atomic clusters.
ανά: Doye, J, κ.ά.
Έκδοση: (2005)

EvolveNet: Evolving Networks by Learning Scale of Depth and Width
ανά: Athul Shibu, κ.ά.
Έκδοση: (2023-08-01)

Robust stability of interactional genetic regulatory networks with reaction-diffusion terms
ανά: Chengye Zou, κ.ά.
Έκδοση: (2017-08-01)

Topology Universality and Dissimilarity in a Class of Scale-Free Networks.
ανά: Lanhua Zhang, κ.ά.
Έκδοση: (2016-01-01)

Modeling algorithmic bias: simplicial complexes and evolving network topologies
ανά: Valentina Pansanella, κ.ά.
Έκδοση: (2022-08-01)

Network topology optimization by turning non-scale-free networks into scale-free networks using nonlinear preferential rewiring method
ανά: Feng Su, κ.ά.
Έκδοση: (2018-11-01)

Modularity, criticality, and evolvability of a developmental gene regulatory network
ανά: Berta Verd, κ.ά.
Έκδοση: (2019-06-01)

Genes, Genomes, and the Road to Diversity: How Regulatory Networks Evolve.
Έκδοση: (2004-12-01)

Topology and Strategy for Supply Network Robustness
ανά: Brintrup, A, κ.ά.
Έκδοση: (2011)

A Scale-Free Topology Construction Model for Wireless Sensor Networks
ανά: Lurong Jiang, κ.ά.
Έκδοση: (2014-08-01)