An efficient algorithm for statistical multiple alignment on arbitrary phylogenetic trees.
We present an efficient algorithm for statistical multiple alignment based on the TKF91 model of Thorne, Kishino, and Felsenstein (1991) on an arbitrary k-leaved phylogenetic tree. The existing algorithms use a hidden Markov model approach, which requires at least O( radical 5(k)) states and leads t...
Autori principali: | Lunter, G, Miklós, I, Song, Y, Hein, J |
---|---|
Natura: | Journal article |
Lingua: | English |
Pubblicazione: |
2003
|
Documenti analoghi
-
Phylogenetic automata, pruning, and multiple alignment
di: Westesson, O, et al.
Pubblicazione: (2011) -
Bayesian phylogenetic inference under a statistical insertion-deletion model
di: Lunter, G, et al.
Pubblicazione: (2003) -
Polynomial algorithms for the Maximal Pairing Problem: efficient phylogenetic targeting on arbitrary trees
di: Stadler Peter F, et al.
Pubblicazione: (2010-06-01) -
An algorithm for statistical alignment of sequences related by a binary tree.
di: Hein, J
Pubblicazione: (2001) -
Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques.
di: Satija, R, et al.
Pubblicazione: (2010)