A one-dimensional model for chemotaxis with hard-core interactions
In this paper we consider a biased velocity jump process with excluded-volume interactions for chemotaxis, where we account for the size of each particle. Starting with a system of N individual hard rod particles in one dimension, we derive a nonlinear kinetic model using two different approaches. T...
| Hlavní autoři: | , , |
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| Médium: | Journal article |
| Jazyk: | English |
| Vydáno: |
American Physical Society
2020
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| _version_ | 1826313236160446464 |
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| author | Ralph, T Taylor, SW Bruna, M |
| author_facet | Ralph, T Taylor, SW Bruna, M |
| author_sort | Ralph, T |
| collection | OXFORD |
| description | In this paper we consider a biased velocity jump process with excluded-volume interactions
for chemotaxis, where we account for the size of each particle. Starting with a system of N
individual hard rod particles in one dimension, we derive a nonlinear kinetic model using two
different approaches. The first approach is a systematic derivation for small occupied fraction of
particles based the method of matched asymptotic expansions. The second approach, based on
a compression method that exploits the single-file motion of hard core particles, does not have
the limitation of a small occupied fraction but requires constant tumbling rates. We validate
our nonlinear model with numerical simulations, comparing its solutions with the corresponding
noninteracting linear model as well as stochastic simulations of the underlying particle system. |
| first_indexed | 2024-09-25T04:09:52Z |
| format | Journal article |
| id | oxford-uuid:06c999a8-af38-428f-a63f-3c68a1f94945 |
| institution | University of Oxford |
| language | English |
| last_indexed | 2024-09-25T04:09:52Z |
| publishDate | 2020 |
| publisher | American Physical Society |
| record_format | dspace |
| spelling | oxford-uuid:06c999a8-af38-428f-a63f-3c68a1f949452024-06-21T14:10:31ZA one-dimensional model for chemotaxis with hard-core interactionsJournal articlehttp://purl.org/coar/resource_type/c_dcae04bcuuid:06c999a8-af38-428f-a63f-3c68a1f94945EnglishSymplectic ElementsAmerican Physical Society2020Ralph, TTaylor, SWBruna, MIn this paper we consider a biased velocity jump process with excluded-volume interactions for chemotaxis, where we account for the size of each particle. Starting with a system of N individual hard rod particles in one dimension, we derive a nonlinear kinetic model using two different approaches. The first approach is a systematic derivation for small occupied fraction of particles based the method of matched asymptotic expansions. The second approach, based on a compression method that exploits the single-file motion of hard core particles, does not have the limitation of a small occupied fraction but requires constant tumbling rates. We validate our nonlinear model with numerical simulations, comparing its solutions with the corresponding noninteracting linear model as well as stochastic simulations of the underlying particle system. |
| spellingShingle | Ralph, T Taylor, SW Bruna, M A one-dimensional model for chemotaxis with hard-core interactions |
| title | A one-dimensional model for chemotaxis with hard-core interactions |
| title_full | A one-dimensional model for chemotaxis with hard-core interactions |
| title_fullStr | A one-dimensional model for chemotaxis with hard-core interactions |
| title_full_unstemmed | A one-dimensional model for chemotaxis with hard-core interactions |
| title_short | A one-dimensional model for chemotaxis with hard-core interactions |
| title_sort | one dimensional model for chemotaxis with hard core interactions |
| work_keys_str_mv | AT ralpht aonedimensionalmodelforchemotaxiswithhardcoreinteractions AT taylorsw aonedimensionalmodelforchemotaxiswithhardcoreinteractions AT brunam aonedimensionalmodelforchemotaxiswithhardcoreinteractions AT ralpht onedimensionalmodelforchemotaxiswithhardcoreinteractions AT taylorsw onedimensionalmodelforchemotaxiswithhardcoreinteractions AT brunam onedimensionalmodelforchemotaxiswithhardcoreinteractions |