Using canavanine resistance to measure mutation rates in Schizosaccharomyces pombe

<p>We constructed a panel of&nbsp;<em>S</em>.&nbsp;<em>pombe</em>&nbsp;strains expressing DNA polymerase &epsilon; variants associated with cancer, specifically POLES297F, POLEV411L, POLEL424V, POLES459F, and used these to compare mutation rates determin...

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Bibliographic Details
Main Authors: Pai, C-C, Heitzer, E, Bertrand, S, Toumazou, S, Humphrey, TC, Kearsey, SE
Format: Journal article
Language:English
Published: Public Library of Science 2023
Description
Summary:<p>We constructed a panel of&nbsp;<em>S</em>.&nbsp;<em>pombe</em>&nbsp;strains expressing DNA polymerase &epsilon; variants associated with cancer, specifically POLES297F, POLEV411L, POLEL424V, POLES459F, and used these to compare mutation rates determined by canavanine resistance with other selective methods. Canavanine-resistance mutation rates are broadly similar to those seen with reversion of the&nbsp;<em>ade-485</em>&nbsp;mutation to adenine prototrophy, but lower than 5-fluoroorotic acid (FOA)-resistance rates (inactivation of&nbsp;<em>ura4</em><sup>+</sup>&nbsp;or&nbsp;<em>ura5</em><sup>+</sup>&nbsp;genes). Inactivation of several genes has been associated with canavanine resistance in&nbsp;<em>S</em>.&nbsp;<em>pombe</em>&nbsp;but surprisingly whole genome sequencing showed that 8/8 spontaneous canavanine-resistant mutants have an&nbsp;<em>R175C</em>&nbsp;mutation in the&nbsp;<em>any1/arn1</em>&nbsp;gene. This gene encodes an &alpha;-arrestin-like protein involved in mediating Pub1 ubiquitylation of target proteins, and the phenotypic resistance to canavanine by this single mutation is similar to that shown by the original &ldquo;<em>can1-1</em>&rdquo; strain, which also has the&nbsp;<em>any1R175C</em>&nbsp;mutation. Some of the spontaneous mutants have additional mutations in arginine transporters, suggesting that this may marginally increase resistance to canavanine. The&nbsp;<em>any1R175C</em>&nbsp;strain showed internalisation of the Cat1 arginine transporter as previously reported, explaining the canavanine-resistance phenotype.</p>