Reporting guidelines for human microbiome research: the STORMS checklist
The particularly interdisciplinary nature of human microbiome research makes the organization and reporting of results spanning epidemiology, biology, bioinformatics, translational medicine and statistics a challenge. Commonly used reporting guidelines for observational or genetic epidemiology studi...
| Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Other Authors: | |
| Format: | Journal article |
| Language: | English |
| Published: |
Springer Nature
2021
|
| _version_ | 1826309750167437312 |
|---|---|
| author | Mirzayi, C Renson, A Zohra, F Elsafoury, S Geistlinger, L Kasselman, LJ Eckenrode, K van de Wijgert, J Loughman, A Marques, FZ MacIntyre, DA Arumugam, M Azhar, R Beghini, F Bergstrom, K Bhatt, A Bisanz, JE Braun, J Bravo, HC Buck, GA Bushman, F Casero, D Clarke, G Collado, MC Cotter, PD Cryan, JF Demmer, RT Devkota, S Elinav, E Escobar, JS Fettweis, J Finn, RD Fodor, AA Forslund, S Franke, A Furlanello, C Gilbert, J Grice, E Haibe-Kains, B Handley, S Herd, P Holmes, S Jacobs, JP Karstens, L Knight, R Knights, D Koren, O Kwon, DS Dowd, JB |
| author2 | Genomic Standards Consortium |
| author_facet | Genomic Standards Consortium Mirzayi, C Renson, A Zohra, F Elsafoury, S Geistlinger, L Kasselman, LJ Eckenrode, K van de Wijgert, J Loughman, A Marques, FZ MacIntyre, DA Arumugam, M Azhar, R Beghini, F Bergstrom, K Bhatt, A Bisanz, JE Braun, J Bravo, HC Buck, GA Bushman, F Casero, D Clarke, G Collado, MC Cotter, PD Cryan, JF Demmer, RT Devkota, S Elinav, E Escobar, JS Fettweis, J Finn, RD Fodor, AA Forslund, S Franke, A Furlanello, C Gilbert, J Grice, E Haibe-Kains, B Handley, S Herd, P Holmes, S Jacobs, JP Karstens, L Knight, R Knights, D Koren, O Kwon, DS Dowd, JB |
| author_sort | Mirzayi, C |
| collection | OXFORD |
| description | The particularly interdisciplinary nature of human microbiome research makes the organization and reporting of results spanning epidemiology, biology, bioinformatics, translational medicine and statistics a challenge. Commonly used reporting guidelines for observational or genetic epidemiology studies lack key features specific to microbiome studies. Therefore, a multidisciplinary group of microbiome epidemiology researchers adapted guidelines for observational and genetic studies to culture-independent human microbiome studies, and also developed new reporting elements for laboratory, bioinformatics and statistical analyses tailored to microbiome studies. The resulting tool, called 'Strengthening The Organization and Reporting of Microbiome Studies' (STORMS), is composed of a 17-item checklist organized into six sections that correspond to the typical sections of a scientific publication, presented as an editable table for inclusion in supplementary materials. The STORMS checklist provides guidance for concise and complete reporting of microbiome studies that will facilitate manuscript preparation, peer review, and reader comprehension of publications and comparative analysis of published results. |
| first_indexed | 2024-03-07T07:40:22Z |
| format | Journal article |
| id | oxford-uuid:0f3724f7-8c1f-435f-b34e-8b1d428bc9e2 |
| institution | University of Oxford |
| language | English |
| last_indexed | 2024-03-07T07:40:22Z |
| publishDate | 2021 |
| publisher | Springer Nature |
| record_format | dspace |
| spelling | oxford-uuid:0f3724f7-8c1f-435f-b34e-8b1d428bc9e22023-04-26T10:26:08ZReporting guidelines for human microbiome research: the STORMS checklistJournal articlehttp://purl.org/coar/resource_type/c_dcae04bcuuid:0f3724f7-8c1f-435f-b34e-8b1d428bc9e2EnglishSymplectic ElementsSpringer Nature2021Mirzayi, CRenson, AZohra, FElsafoury, SGeistlinger, LKasselman, LJEckenrode, Kvan de Wijgert, JLoughman, AMarques, FZMacIntyre, DAArumugam, MAzhar, RBeghini, FBergstrom, KBhatt, ABisanz, JEBraun, JBravo, HCBuck, GABushman, FCasero, DClarke, GCollado, MCCotter, PDCryan, JFDemmer, RTDevkota, SElinav, EEscobar, JSFettweis, JFinn, RDFodor, AAForslund, SFranke, AFurlanello, CGilbert, JGrice, EHaibe-Kains, BHandley, SHerd, PHolmes, SJacobs, JPKarstens, LKnight, RKnights, DKoren, OKwon, DSDowd, JBGenomic Standards ConsortiumMassive Analysis and Quality Control SocietyThe particularly interdisciplinary nature of human microbiome research makes the organization and reporting of results spanning epidemiology, biology, bioinformatics, translational medicine and statistics a challenge. Commonly used reporting guidelines for observational or genetic epidemiology studies lack key features specific to microbiome studies. Therefore, a multidisciplinary group of microbiome epidemiology researchers adapted guidelines for observational and genetic studies to culture-independent human microbiome studies, and also developed new reporting elements for laboratory, bioinformatics and statistical analyses tailored to microbiome studies. The resulting tool, called 'Strengthening The Organization and Reporting of Microbiome Studies' (STORMS), is composed of a 17-item checklist organized into six sections that correspond to the typical sections of a scientific publication, presented as an editable table for inclusion in supplementary materials. The STORMS checklist provides guidance for concise and complete reporting of microbiome studies that will facilitate manuscript preparation, peer review, and reader comprehension of publications and comparative analysis of published results. |
| spellingShingle | Mirzayi, C Renson, A Zohra, F Elsafoury, S Geistlinger, L Kasselman, LJ Eckenrode, K van de Wijgert, J Loughman, A Marques, FZ MacIntyre, DA Arumugam, M Azhar, R Beghini, F Bergstrom, K Bhatt, A Bisanz, JE Braun, J Bravo, HC Buck, GA Bushman, F Casero, D Clarke, G Collado, MC Cotter, PD Cryan, JF Demmer, RT Devkota, S Elinav, E Escobar, JS Fettweis, J Finn, RD Fodor, AA Forslund, S Franke, A Furlanello, C Gilbert, J Grice, E Haibe-Kains, B Handley, S Herd, P Holmes, S Jacobs, JP Karstens, L Knight, R Knights, D Koren, O Kwon, DS Dowd, JB Reporting guidelines for human microbiome research: the STORMS checklist |
| title | Reporting guidelines for human microbiome research: the STORMS checklist |
| title_full | Reporting guidelines for human microbiome research: the STORMS checklist |
| title_fullStr | Reporting guidelines for human microbiome research: the STORMS checklist |
| title_full_unstemmed | Reporting guidelines for human microbiome research: the STORMS checklist |
| title_short | Reporting guidelines for human microbiome research: the STORMS checklist |
| title_sort | reporting guidelines for human microbiome research the storms checklist |
| work_keys_str_mv | AT mirzayic reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT rensona reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT zohraf reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT elsafourys reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT geistlingerl reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT kasselmanlj reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT eckenrodek reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT vandewijgertj reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT loughmana reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT marquesfz reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT macintyreda reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT arumugamm reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT azharr reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT beghinif reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT bergstromk reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT bhatta reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT bisanzje reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT braunj reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT bravohc reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT buckga reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT bushmanf reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT caserod reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT clarkeg reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT colladomc reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT cotterpd reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT cryanjf reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT demmerrt reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT devkotas reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT elinave reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT escobarjs reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT fettweisj reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT finnrd reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT fodoraa reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT forslunds reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT frankea reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT furlanelloc reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT gilbertj reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT gricee reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT haibekainsb reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT handleys reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT herdp reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT holmess reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT jacobsjp reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT karstensl reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT knightr reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT knightsd reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT koreno reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT kwonds reportingguidelinesforhumanmicrobiomeresearchthestormschecklist AT dowdjb reportingguidelinesforhumanmicrobiomeresearchthestormschecklist |