Genomic diversity affects the accuracy of bacterial SNP calling pipelines
<br/><strong>Background: </strong>Accurately identifying SNPs from bacterial sequencing data is an essential requirement for using genomics to track transmission and predict important phenotypes such as antimicrobial resistance. However, most previous performance evaluations of SNP...
Main Authors: | Bush, S, Foster, D, Eyre, D, Clark, E, De Maio, N, Shaw, L, Stoesser, N, Peto, T, Crook, D, Walker, A |
---|---|
Format: | Journal article |
Published: |
Oxford University Press
2020
|
Similar Items
-
Simulated bacterial genomes for evaluating SNP calling pipelines
by: Bush, S
Published: (2019) -
Real sequencing datasets for evaluating bacterial SNP calling pipelines
by: Bush, S
Published: (2019) -
Evaluation of the accuracy of bacterial genome reconstruction with Oxford Nanopore R10.4.1 long-read-only sequencing
by: Sanderson, N, et al.
Published: (2024) -
Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes
by: De Maio, N, et al.
Published: (2019) -
Two distinct patterns of Clostridium difficile diversity across Europe indicates contrasting routes of spread
by: Eyre, D, et al.
Published: (2018)