Genotype imputation with thousands of genomes.

Genotype imputation with thousands of genomes.

Genotype imputation is a statistical technique that is often used to increase the power and resolution of genetic association studies. Imputation methods work by using haplotype patterns in a reference panel to predict unobserved genotypes in a study dataset, and a number of approaches have been pro...

Disgrifiad llawn

Manylion Llyfryddiaeth
Prif Awduron:	Howie, B, Marchini, J, Stephens, M
Fformat:	Journal article
Iaith:	English
Cyhoeddwyd:	2011

Eitemau Tebyg

Genotype imputation for genome-wide association studies.
gan: Marchini, J, et al.
Cyhoeddwyd: (2010)

Comparing algorithms for genotype imputation.
gan: Marchini, J, et al.
Cyhoeddwyd: (2008)

Fast and accurate genotype imputation in genome-wide association studies through pre-phasing.
gan: Howie, B, et al.
Cyhoeddwyd: (2012)

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies.
gan: Howie, B, et al.
Cyhoeddwyd: (2009)

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
gan: Howie, B, et al.
Cyhoeddwyd: (2009)

A new multipoint method for genome-wide association studies by imputation of genotypes.
gan: Marchini, J, et al.
Cyhoeddwyd: (2007)

Genotype Imputation
gan: Marchini, J
Cyhoeddwyd: (2011)

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies.
gan: Bryan N Howie, et al.
Cyhoeddwyd: (2009-06-01)

Thousands of Qatari genomes inform human migration history and improve imputation of Arab haplotypes
gan: Rozaimi Mohamad Razali, et al.
Cyhoeddwyd: (2021-10-01)

Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip.
gan: Spencer, C, et al.
Cyhoeddwyd: (2009)

Genotype imputation in human genomic studies
gan: A. A. Berdnikova, et al.
Cyhoeddwyd: (2024-10-01)

A linear complexity phasing method for thousands of genomes
gan: Delaneau, O, et al.
Cyhoeddwyd: (2012)

A linear complexity phasing method for thousands of genomes.
gan: Delaneau, O, et al.
Cyhoeddwyd: (2012)

Genotype imputation using the Positional Burrows Wheeler Transform.
gan: Simone Rubinacci, et al.
Cyhoeddwyd: (2020-11-01)

Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip.
gan: Chris C A Spencer, et al.
Cyhoeddwyd: (2009-05-01)

Imputation of missing genotypes: an empirical evaluation of IMPUTE
gan: Steinberg Martin H, et al.
Cyhoeddwyd: (2008-12-01)

Reconstruction of private genomes through reference-based genotype imputation
gan: Matthew J. Mosca, et al.
Cyhoeddwyd: (2023-12-01)

Genotype imputation for the prediction of genomic breeding values in non-genotyped and low-density genotyped individuals
gan: Cleveland Matthew A, et al.
Cyhoeddwyd: (2011-05-01)

Imputation of genotypes from low- to high-density genotyping platforms and implications for genomic selection
gan: D.P. Berry, et al.
Cyhoeddwyd: (2011-01-01)

Genotype Imputation to Improve the Cost-Efficiency of Genomic Selection in Rabbits
gan: Enrico Mancin, et al.
Cyhoeddwyd: (2021-03-01)

Comparison of multiple imputation and other methods for the analysis of imputed genotypes
gan: Paul L. Auer, et al.
Cyhoeddwyd: (2023-06-01)

Strategies and utility of imputed SNP genotypes for genomic analysis in dairy cattle
gan: Khatkar Mehar S, et al.
Cyhoeddwyd: (2012-10-01)

Genomic prediction from observed and imputed high-density ovine genotypes
gan: Nasir Moghaddar, et al.
Cyhoeddwyd: (2017-04-01)

Novel methods for genotype imputation to whole-genome sequence and a simple linear model to predict imputation accuracy
gan: Steven G. Larmer, et al.
Cyhoeddwyd: (2017-12-01)

Improving genomic prediction accuracy of pig reproductive traits based on genotype imputation using preselected markers with different imputation platforms
gan: J. Sun, et al.
Cyhoeddwyd: (2025-01-01)

Current software for genotype imputation
gan: Ellinghaus David, et al.
Cyhoeddwyd: (2009-07-01)

Assessment of genotype imputation performance using 1000 Genomes in African American studies.
gan: Dana B Hancock, et al.
Cyhoeddwyd: (2012-01-01)

Impact of genotype imputation on the performance of GBLUP and Bayesian methods for genomic prediction.
gan: Liuhong Chen, et al.
Cyhoeddwyd: (2014-01-01)

Maast: genotyping thousands of microbial strains efficiently
gan: Zhou Jason Shi, et al.
Cyhoeddwyd: (2023-08-01)

Performance of genotype imputation for low frequency and rare variants from the 1000 genomes.
gan: Hou-Feng Zheng, et al.
Cyhoeddwyd: (2015-01-01)

ImputAccur: fast and user-friendly calculation of genotype-imputation accuracy-measures
gan: Kolja A. Thormann, et al.
Cyhoeddwyd: (2022-08-01)

imputeqc: an R package for assessing imputation quality of genotypes and optimizing imputation parameters
gan: Gennady V. Khvorykh, et al.
Cyhoeddwyd: (2020-07-01)

Genomic Evaluation of Colombian Holstein Cattle Using Imputed Genotypes at Medium Density
gan: Juan C. Zambrano, et al.
Cyhoeddwyd: (2019-05-01)

Optimizing Low-Cost Genotyping and Imputation Strategies for Genomic Selection in Atlantic Salmon
gan: Smaragda Tsairidou, et al.
Cyhoeddwyd: (2020-02-01)

Using genotype imputation to integrate Canola populations for genome-wide association and genomic prediction of blackleg resistance
gan: Huanhuan Zhao, et al.
Cyhoeddwyd: (2025-03-01)

Development of a Panel of Genotyping-in-Thousands by Sequencing in Capsicum
gan: Jinkwan Jo, et al.
Cyhoeddwyd: (2021-10-01)

Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle
gan: Valentina Riggio, et al.
Cyhoeddwyd: (2022-09-01)

Assessing accuracy of genotype imputation in American Indians.
gan: Alka Malhotra, et al.
Cyhoeddwyd: (2014-01-01)

Evaluation of measures of correctness of genotype imputation in the context of genomic prediction: a review of livestock applications
gan: M.P.L. Calus, et al.
Cyhoeddwyd: (2014-01-01)

LinkImputeR: user-guided genotype calling and imputation for non-model organisms
gan: Daniel Money, et al.
Cyhoeddwyd: (2017-07-01)