Alignment-free sequence comparison (II): theoretical power of comparison statistics.

Alignment-free sequence comparison (II): theoretical power of comparison statistics.

Rapid methods for alignment-free sequence comparison make large-scale comparisons between sequences increasingly feasible. Here we study the power of the statistic D2, which counts the number of matching k-tuples between two sequences, as well as D2*, which uses centralized counts, and D2S, which is...

Szczegółowa specyfikacja

Opis bibliograficzny
Główni autorzy:	Wan, L, Reinert, G, Sun, F, Waterman, MS
Format:	Journal article
Język:	English
Wydane:	2010

Podobne zapisy

Alignment-free sequence comparison (I): statistics and power.
od: Reinert, G, i wsp.
Wydane: (2009)

New powerful statistics for alignment-free sequence comparison under a pattern transfer model.
od: Liu, X, i wsp.
Wydane: (2011)

New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing.
od: Song, K, i wsp.
Wydane: (2014)

Multiple alignment-free sequence comparison.
od: Ren, J, i wsp.
Wydane: (2013)

Alignment-free protein interaction network comparison.
od: Ali, W, i wsp.
Wydane: (2014)

Benchmarking of alignment-free sequence comparison methods
od: Andrzej Zielezinski, i wsp.
Wydane: (2019-07-01)

Alignment-free sequence analysis and applications
od: Ren, J, i wsp.
Wydane: (2018)

Alignment-free sequence comparison: benefits, applications, and tools
od: Andrzej Zielezinski, i wsp.
Wydane: (2017-10-01)

Estimates of statistical significance for comparison of individual positions in multiple sequence alignments
od: Sadreyev Ruslan I, i wsp.
Wydane: (2004-08-01)

On the length of the longest exact position match in a random sequence.
od: Reinert, G, i wsp.
Wydane: (2007)

An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction
od: Sriram P. Chockalingam, i wsp.
Wydane: (2020-11-01)

Alignment-free genomic sequence comparison using FCGR and signal processing
od: Daniel Lichtblau
Wydane: (2019-12-01)

Afann: bias adjustment for alignment-free sequence comparison based on sequencing data using neural network regression
od: Kujin Tang, i wsp.
Wydane: (2019-12-01)

Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage
od: Anna-Katharina Lau, i wsp.
Wydane: (2019-12-01)

Sequence Comparison Alignment-Free Approach Based on Suffix Tree and L-Words Frequency
od: Inês Soares, i wsp.
Wydane: (2012-01-01)

A phylogenetic analysis of the Brassicales clade based on an alignment-free sequence comparison method
od: Klas eHatje, i wsp.
Wydane: (2012-08-01)

A Systematic Comparison of Various Statistical Alignment Models
od: Franz Josef Och, i wsp.
Wydane: (2021-03-01)

rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison.
od: Lars Hahn, i wsp.
Wydane: (2016-10-01)

Comparison and evaluation of multiple sequence alignment tools in bininformatics
od: Sedaghatinia, Asieh, i wsp.
Wydane: (2009)

GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis.
od: Mitchell J Brittnacher, i wsp.
Wydane: (2016-01-01)

The power of detecting enriched patterns: an HMM approach.
od: Zhai, Z, i wsp.
Wydane: (2010)

Information theoretic alignment free variant calling
od: Justin Bedo, i wsp.
Wydane: (2016-07-01)

On an alternative sequence comparison statistic of Steele
od: Ümit Işlak, i wsp.
Wydane: (2020-07-01)

The statistical power of k-mer based aggregative statistics for alignment-free detection of horizontal gene transfer
od: Guan-Da Huang, i wsp.
Wydane: (2019-09-01)

SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation
od: Strope Cory L, i wsp.
Wydane: (2011-05-01)

THEORETIC AND PRACTICAL STATISTICAL PROBLEMS OF COMPARISON BETWEEN COUNTRIES
od: Elisabeta Rosca
Wydane: (2006-05-01)

Alignment-free genome comparison enables accurate geographic sourcing of white oak DNA
od: Kujin Tang, i wsp.
Wydane: (2018-12-01)

Statistics for Bioinformatics : Methods for Multiple Sequence Alignment /
od: Julie, Thompson
Wydane: (2016)

Sequence Alignment Algorithm for Statistical Similarity Assessment
od: Jakub Nikonowicz, i wsp.
Wydane: (2021-01-01)

Automated, nonrigid alignment of clinical myocardial contrast echocardiography image sequences: comparison with manual alignment.
od: Noble, J, i wsp.
Wydane: (2002)

Levenshtein Distance, Sequence Comparison and Biological Database Search
od: Berger, Bonnie, i wsp.
Wydane: (2021)

Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization
od: Klau Gunnar W, i wsp.
Wydane: (2007-07-01)

Comprehensive comparison of graph based multiple protein sequence alignment strategies
od: Plyusnin Ilya, i wsp.
Wydane: (2012-04-01)

Scaling statistical multiple sequence alignment to large datasets
od: Michael Nute, i wsp.
Wydane: (2016-11-01)

LaRA 2: parallel and vectorized program for sequence–structure alignment of RNA sequences
od: Jörg Winkler, i wsp.
Wydane: (2022-01-01)

Comparison of Short-Read Sequence Aligners Indicates Strengths and Weaknesses for Biologists to Consider
od: Ryan Musich, i wsp.
Wydane: (2021-04-01)

Protein sequence alignment analysis by local covariation: coevolution statistics detect benchmark alignment errors.
od: Russell J Dickson, i wsp.
Wydane: (2012-01-01)

An algorithm for statistical alignment of sequences related by a binary tree.
od: Hein, J
Wydane: (2001)

A statistical score for assessing the quality of multiple sequence alignments
od: Aittokallio Tero, i wsp.
Wydane: (2006-11-01)

INSIDER: alignment-free detection of foreign DNA sequences
od: Aidan P. Tay, i wsp.
Wydane: (2021-01-01)