Characterising the determinants of hypoxia inducible transcription factors binding to chromatin

Characterising the determinants of hypoxia inducible transcription factors binding to chromatin

<p>Hypoxia regulates many hundreds of genes that play important roles in numerous physiological and pathophysiological processes. The hypoxia inducible transcription factors (HIFs) are central to the transcriptional activation of these hypoxia-regulated genes. However, to date, little is known...

Deskribapen osoa

Xehetasun bibliografikoak
Egile nagusia:	Smythies, J
Beste egile batzuk:	Ratcliffe, P
Formatua:	Thesis
Hizkuntza:	English
Argitaratua:	2017
Gaiak:	Transcription factors

Antzeko izenburuak

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Argitaratua: (2024-01-01)

Transcription factors organize into functional groups on the linear genome and in 3D chromatin
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Argitaratua: (2023-08-01)

Assessing the model transferability for prediction of transcription factor binding sites based on chromatin accessibility
nork: Sheng Liu, et al.
Argitaratua: (2017-07-01)

MORC proteins regulate transcription factor binding by mediating chromatin compaction in active chromatin regions
nork: Zhenhui Zhong, et al.
Argitaratua: (2023-04-01)

Mechanisms governing target search and binding dynamics of hypoxia-inducible factors
nork: Yu Chen, et al.
Argitaratua: (2022-11-01)

E-box binding transcription factors in cancer
nork: Yuanzhong Pan, et al.
Argitaratua: (2023-08-01)

The chromatin remodeling protein Lsh alters nucleosome occupancy at putative enhancers and modulates binding of lineage specific transcription factors
nork: Jianke Ren, et al.
Argitaratua: (2019-03-01)

Hypoxia and Chromatin: A Focus on Transcriptional Repression Mechanisms
nork: Michael Batie, et al.
Argitaratua: (2018-04-01)

An Algorithm for Identifying Novel Targets of Transcription Factor Families: Application to Hypoxia-inducible Factor 1 Targets
nork: Yue Jiang, et al.
Argitaratua: (2009-01-01)

The interplay between chromatin and transcription factor networks during B cell development: who pulls the trigger first?
nork: Mohamed-Amin eChoukrallah, et al.
Argitaratua: (2014-04-01)

Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species
nork: Lianggang Huang, et al.
Argitaratua: (2021-09-01)

TF-chRDP: a method for simultaneously capturing transcription factor binding chromatin-associated RNA, DNA and protein
nork: Duo Ning, et al.
Argitaratua: (2025-03-01)

Role of transcription factors and chromatin modifiers in driving lineage reprogramming in treatment-induced neuroendocrine prostate cancer
nork: Amritha Sreekumar, et al.
Argitaratua: (2023-01-01)

DeepCAGE: Incorporating Transcription Factors in Genome-wide Prediction of Chromatin Accessibility
nork: Qiao Liu, et al.
Argitaratua: (2022-06-01)

A screening system to identify transcription factors that induce binding site-directed DNA demethylation
nork: Takahiro Suzuki, et al.
Argitaratua: (2017-12-01)

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nork: Frederick Kinyua Kamanu, et al.
Argitaratua: (2012-06-01)

H3.3 contributes to chromatin accessibility and transcription factor binding at promoter-proximal regulatory elements in embryonic stem cells
nork: Amanuel Tafessu, et al.
Argitaratua: (2023-02-01)

Differential Grainy head binding correlates with variation in chromatin structure and gene expression in Drosophila melanogaster
nork: Henry A. Ertl, et al.
Argitaratua: (2022-12-01)

Restriction of Cellular Plasticity of Differentiated Cells Mediated by Chromatin Modifiers, Transcription Factors and Protein Kinases
nork: Dylan P. Rahe, et al.
Argitaratua: (2019-07-01)

Using methylation data to improve transcription factor binding prediction
nork: Daniel Morgan, et al.
Argitaratua: (2024-12-01)

A regulatory role for repeated decoy transcription factor binding sites in target gene expression
nork: Tek‐Hyung Lee, et al.
Argitaratua: (2012-03-01)

Concentration dependent chromatin states induced by the bicoid morphogen gradient
nork: Colleen E Hannon, et al.
Argitaratua: (2017-09-01)

Proteomic analyses reveal distinct chromatin‐associated and soluble transcription factor complexes
nork: Xu Li, et al.
Argitaratua: (2015-01-01)

BTFBS: Binding Prediction of Bacterial Transcription Factors and Binding Sites Based on Deep Learning
nork: Bingbing Jin, et al.
Argitaratua: (2025-02-01)

Comprehensive analysis of computational approaches in plant transcription factors binding regions discovery
nork: Jyoti, et al.
Argitaratua: (2024-10-01)

Calmodulin-Binding Transcription Factors: Roles in Plant Response to Abiotic Stresses
nork: Yayu Liu, et al.
Argitaratua: (2025-02-01)

DNA methylation presents distinct binding sites for human transcription factors
nork: Shaohui Hu, et al.
Argitaratua: (2013-09-01)

Editorial: Transcription factors and regulation of transcriptional programs in fungi
nork: Richard B. Todd, et al.
Argitaratua: (2022-12-01)

Emerging Roles of Plant DNA-Binding With One Finger Transcription Factors in Various Hormone and Stress Signaling Pathways
nork: Zemin Wang, et al.
Argitaratua: (2022-05-01)

Genome-wide identification and characterisation of bHLH transcription factors in Artemisia annua
nork: Shuwei Chang, et al.
Argitaratua: (2023-02-01)

TF-COMB – Discovering grammar of transcription factor binding sites
nork: Mette Bentsen, et al.
Argitaratua: (2022-01-01)

Modeling binding specificities of transcription factor pairs with random forests
nork: Anni A. Antikainen, et al.
Argitaratua: (2022-06-01)

Transcription factor binding sites are highly enriched within microRNA precursor sequences
nork: Piriyapongsa Jittima, et al.
Argitaratua: (2011-12-01)

A continuum of zinc finger transcription factor retention on native chromatin underlies dynamic genome organization
nork: Siling Hu, et al.
Argitaratua: (2024-05-01)

Transcription and chromatin determinants of de novo DNA methylation timing in oocytes
nork: Lenka Gahurova, et al.
Argitaratua: (2017-05-01)

The Binding Occupancy of Pro-Hypertrophic Transcription Factors among Cardiac Developmental Enhancers
nork: Rabail Zehra Raza, et al.
Argitaratua: (2024-01-01)

Recent Advances in the Computational Discovery of Transcription Factor Binding Sites
nork: Ioannis P. Androulakis, et al.
Argitaratua: (2009-03-01)

A preliminary computational outputs versus experimental results: Application of sTRAP, a biophysical tool for the analysis of SNPs of transcription factor‐binding sites
nork: Shirin Moradifard, et al.
Argitaratua: (2020-05-01)

Hypoxia‐Inducible Factor‐2α Signaling in the Skeletal System
nork: Sarah V Mendoza, et al.
Argitaratua: (2023-04-01)

Analysis of genomic sequence motifs for deciphering transcription factor binding and transcriptional regulation in eukaryotic cells
nork: Valentina eBoeva, et al.
Argitaratua: (2016-02-01)