Characterising the determinants of hypoxia inducible transcription factors binding to chromatin

Characterising the determinants of hypoxia inducible transcription factors binding to chromatin

<p>Hypoxia regulates many hundreds of genes that play important roles in numerous physiological and pathophysiological processes. The hypoxia inducible transcription factors (HIFs) are central to the transcriptional activation of these hypoxia-regulated genes. However, to date, little is known...

Bibliográfalaš dieđut
Váldodahkki:	Smythies, J
Eará dahkkit:	Ratcliffe, P
Materiálatiipa:	Oahppočájánas
Giella:	English
Almmustuhtton:	2017
Fáttát:	Transcription factors

Geahča maid

Regulation of chromatin architecture by transcription factor binding
Dahkki: Stephanie Portillo-Ledesma, et al.
Almmustuhtton: (2024-01-01)

Transcription factors organize into functional groups on the linear genome and in 3D chromatin
Dahkki: Rakesh Netha Vadnala, et al.
Almmustuhtton: (2023-08-01)

Assessing the model transferability for prediction of transcription factor binding sites based on chromatin accessibility
Dahkki: Sheng Liu, et al.
Almmustuhtton: (2017-07-01)

MORC proteins regulate transcription factor binding by mediating chromatin compaction in active chromatin regions
Dahkki: Zhenhui Zhong, et al.
Almmustuhtton: (2023-04-01)

Mechanisms governing target search and binding dynamics of hypoxia-inducible factors
Dahkki: Yu Chen, et al.
Almmustuhtton: (2022-11-01)

E-box binding transcription factors in cancer
Dahkki: Yuanzhong Pan, et al.
Almmustuhtton: (2023-08-01)

The chromatin remodeling protein Lsh alters nucleosome occupancy at putative enhancers and modulates binding of lineage specific transcription factors
Dahkki: Jianke Ren, et al.
Almmustuhtton: (2019-03-01)

Hypoxia and Chromatin: A Focus on Transcriptional Repression Mechanisms
Dahkki: Michael Batie, et al.
Almmustuhtton: (2018-04-01)

An Algorithm for Identifying Novel Targets of Transcription Factor Families: Application to Hypoxia-inducible Factor 1 Targets
Dahkki: Yue Jiang, et al.
Almmustuhtton: (2009-01-01)

The interplay between chromatin and transcription factor networks during B cell development: who pulls the trigger first?
Dahkki: Mohamed-Amin eChoukrallah, et al.
Almmustuhtton: (2014-04-01)

Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species
Dahkki: Lianggang Huang, et al.
Almmustuhtton: (2021-09-01)

TF-chRDP: a method for simultaneously capturing transcription factor binding chromatin-associated RNA, DNA and protein
Dahkki: Duo Ning, et al.
Almmustuhtton: (2025-03-01)

Role of transcription factors and chromatin modifiers in driving lineage reprogramming in treatment-induced neuroendocrine prostate cancer
Dahkki: Amritha Sreekumar, et al.
Almmustuhtton: (2023-01-01)

DeepCAGE: Incorporating Transcription Factors in Genome-wide Prediction of Chromatin Accessibility
Dahkki: Qiao Liu, et al.
Almmustuhtton: (2022-06-01)

A screening system to identify transcription factors that induce binding site-directed DNA demethylation
Dahkki: Takahiro Suzuki, et al.
Almmustuhtton: (2017-12-01)

Mutations and binding sites of human transcription factors
Dahkki: Frederick Kinyua Kamanu, et al.
Almmustuhtton: (2012-06-01)

H3.3 contributes to chromatin accessibility and transcription factor binding at promoter-proximal regulatory elements in embryonic stem cells
Dahkki: Amanuel Tafessu, et al.
Almmustuhtton: (2023-02-01)

Differential Grainy head binding correlates with variation in chromatin structure and gene expression in Drosophila melanogaster
Dahkki: Henry A. Ertl, et al.
Almmustuhtton: (2022-12-01)

Restriction of Cellular Plasticity of Differentiated Cells Mediated by Chromatin Modifiers, Transcription Factors and Protein Kinases
Dahkki: Dylan P. Rahe, et al.
Almmustuhtton: (2019-07-01)

Using methylation data to improve transcription factor binding prediction
Dahkki: Daniel Morgan, et al.
Almmustuhtton: (2024-12-01)

A regulatory role for repeated decoy transcription factor binding sites in target gene expression
Dahkki: Tek‐Hyung Lee, et al.
Almmustuhtton: (2012-03-01)

Concentration dependent chromatin states induced by the bicoid morphogen gradient
Dahkki: Colleen E Hannon, et al.
Almmustuhtton: (2017-09-01)

Proteomic analyses reveal distinct chromatin‐associated and soluble transcription factor complexes
Dahkki: Xu Li, et al.
Almmustuhtton: (2015-01-01)

BTFBS: Binding Prediction of Bacterial Transcription Factors and Binding Sites Based on Deep Learning
Dahkki: Bingbing Jin, et al.
Almmustuhtton: (2025-02-01)

Comprehensive analysis of computational approaches in plant transcription factors binding regions discovery
Dahkki: Jyoti, et al.
Almmustuhtton: (2024-10-01)

Calmodulin-Binding Transcription Factors: Roles in Plant Response to Abiotic Stresses
Dahkki: Yayu Liu, et al.
Almmustuhtton: (2025-02-01)

DNA methylation presents distinct binding sites for human transcription factors
Dahkki: Shaohui Hu, et al.
Almmustuhtton: (2013-09-01)

Editorial: Transcription factors and regulation of transcriptional programs in fungi
Dahkki: Richard B. Todd, et al.
Almmustuhtton: (2022-12-01)

Emerging Roles of Plant DNA-Binding With One Finger Transcription Factors in Various Hormone and Stress Signaling Pathways
Dahkki: Zemin Wang, et al.
Almmustuhtton: (2022-05-01)

Genome-wide identification and characterisation of bHLH transcription factors in Artemisia annua
Dahkki: Shuwei Chang, et al.
Almmustuhtton: (2023-02-01)

TF-COMB – Discovering grammar of transcription factor binding sites
Dahkki: Mette Bentsen, et al.
Almmustuhtton: (2022-01-01)

Modeling binding specificities of transcription factor pairs with random forests
Dahkki: Anni A. Antikainen, et al.
Almmustuhtton: (2022-06-01)

Transcription factor binding sites are highly enriched within microRNA precursor sequences
Dahkki: Piriyapongsa Jittima, et al.
Almmustuhtton: (2011-12-01)

A continuum of zinc finger transcription factor retention on native chromatin underlies dynamic genome organization
Dahkki: Siling Hu, et al.
Almmustuhtton: (2024-05-01)

Transcription and chromatin determinants of de novo DNA methylation timing in oocytes
Dahkki: Lenka Gahurova, et al.
Almmustuhtton: (2017-05-01)

The Binding Occupancy of Pro-Hypertrophic Transcription Factors among Cardiac Developmental Enhancers
Dahkki: Rabail Zehra Raza, et al.
Almmustuhtton: (2024-01-01)

Recent Advances in the Computational Discovery of Transcription Factor Binding Sites
Dahkki: Ioannis P. Androulakis, et al.
Almmustuhtton: (2009-03-01)

A preliminary computational outputs versus experimental results: Application of sTRAP, a biophysical tool for the analysis of SNPs of transcription factor‐binding sites
Dahkki: Shirin Moradifard, et al.
Almmustuhtton: (2020-05-01)

Hypoxia‐Inducible Factor‐2α Signaling in the Skeletal System
Dahkki: Sarah V Mendoza, et al.
Almmustuhtton: (2023-04-01)

Analysis of genomic sequence motifs for deciphering transcription factor binding and transcriptional regulation in eukaryotic cells
Dahkki: Valentina eBoeva, et al.
Almmustuhtton: (2016-02-01)