Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison
We present a tool called Rahnuma for prediction and analysis of metabolic pathways and comparison of metabolic networks. Rahnuma represents metabolic networks as hypergraphs and computes all possible pathways between two or more metabolites. It provides an intuitive way to answer biological question...
| Main Authors: | , , |
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| Format: | Journal article |
| Language: | English |
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Oxford University Press
2009
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| _version_ | 1797059064980570112 |
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| author | Mithani, A Preston, G Hein, J |
| author2 | The International Society for Computational Biology |
| author_facet | The International Society for Computational Biology Mithani, A Preston, G Hein, J |
| author_sort | Mithani, A |
| collection | OXFORD |
| description | We present a tool called Rahnuma for prediction and analysis of metabolic pathways and comparison of metabolic networks. Rahnuma represents metabolic networks as hypergraphs and computes all possible pathways between two or more metabolites. It provides an intuitive way to answer biological questions focusing on differences between organisms or the evolution of different species by allowing pathway-based metabolic network comparisons at an organism as well as at a phylogenetic level. Rahnuma is available online at http://portal.stats.ox.ac.uk:8080/rahnuma/. |
| first_indexed | 2024-03-06T19:58:58Z |
| format | Journal article |
| id | oxford-uuid:269e5c24-f657-4c31-9c56-b1313a161cbe |
| institution | University of Oxford |
| language | English |
| last_indexed | 2024-03-06T19:58:58Z |
| publishDate | 2009 |
| publisher | Oxford University Press |
| record_format | dspace |
| spelling | oxford-uuid:269e5c24-f657-4c31-9c56-b1313a161cbe2022-03-26T12:02:01ZRahnuma: hypergraph-based tool for metabolic pathway prediction and network comparisonJournal articlehttp://purl.org/coar/resource_type/c_dcae04bcuuid:269e5c24-f657-4c31-9c56-b1313a161cbeStatistics (see also social sciences)Plant SciencesMathematical genetics and bioinformatics (statistics)EnglishOxford University Research Archive - ValetOxford University Press2009Mithani, APreston, GHein, JThe International Society for Computational BiologyWe present a tool called Rahnuma for prediction and analysis of metabolic pathways and comparison of metabolic networks. Rahnuma represents metabolic networks as hypergraphs and computes all possible pathways between two or more metabolites. It provides an intuitive way to answer biological questions focusing on differences between organisms or the evolution of different species by allowing pathway-based metabolic network comparisons at an organism as well as at a phylogenetic level. Rahnuma is available online at http://portal.stats.ox.ac.uk:8080/rahnuma/. |
| spellingShingle | Statistics (see also social sciences) Plant Sciences Mathematical genetics and bioinformatics (statistics) Mithani, A Preston, G Hein, J Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison |
| title | Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison |
| title_full | Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison |
| title_fullStr | Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison |
| title_full_unstemmed | Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison |
| title_short | Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison |
| title_sort | rahnuma hypergraph based tool for metabolic pathway prediction and network comparison |
| topic | Statistics (see also social sciences) Plant Sciences Mathematical genetics and bioinformatics (statistics) |
| work_keys_str_mv | AT mithania rahnumahypergraphbasedtoolformetabolicpathwaypredictionandnetworkcomparison AT prestong rahnumahypergraphbasedtoolformetabolicpathwaypredictionandnetworkcomparison AT heinj rahnumahypergraphbasedtoolformetabolicpathwaypredictionandnetworkcomparison |