Gibbs sampler for statistical multiple alignment

Gibbs sampler for statistical multiple alignment

For a set of sequences, related by a binary tree, that have evolved according to the Thorne-Kishino-Felsenstein model, a Gibbs sampler is presented for simulating the ancestral sequences and their alignments. The updating step consists in updating the ancestral sequence and its three alignments with...

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Bibliografiske detaljer
Main Authors:	Jensen, J, Hein, J
Format:	Journal article
Sprog:	English
Udgivet:	2005

Lignende værker

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af: Hein, J, et al.
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An exact auxiliary variable Gibbs sampler for a class of diffusions
af: Wang, Q, et al.
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On Bayesian Estimation in Mixed Linear Models Using the Gibbs Sampler
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Udgivet: (2012-11-01)

MALA-within-Gibbs Samplers for High-Dimensional Distributions with Sparse Conditional Structure
af: Tong, XT, et al.
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Udgivet: (1999)

Analytic convergence rates and parameterisation issues for the Gibbs sampler applied to state space models.
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Tracing spinning reserve inadequacy risk via hybrid importance sampling with an optimised partially collapsed Gibbs sampler
af: Yue Wang
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Entropic Dynamics on Gibbs Statistical Manifolds
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Volumetric Next Best View by 3D Occupancy Mapping Using Markov Chain Gibbs Sampler for Precise Manufacturing
af: Lei Hou, et al.
Udgivet: (2019-01-01)

GBNet: Deciphering regulatory rules in the co-regulated genes using a Gibbs sampler enhanced Bayesian network approach
af: Wang Wei, et al.
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An efficient algorithm for statistical multiple alignment on arbitrary phylogenetic trees.
af: Lunter, G, et al.
Udgivet: (2003)

An algorithm for statistical alignment of sequences related by a binary tree.
af: Hein, J
Udgivet: (2001)

Gibbs fragmentation trees
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Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques.
af: Satija, R, et al.
Udgivet: (2010)

A simulation-based approach to statistical alignment
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The Gibbs paradox
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Udgivet: (2018)

The Gibbs Paradox
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Herded Gibbs Sampling
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Statistical equilibrium in quantum gravity: Gibbs states in group field theory
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