Gibbs sampler for statistical multiple alignment

Gibbs sampler for statistical multiple alignment

For a set of sequences, related by a binary tree, that have evolved according to the Thorne-Kishino-Felsenstein model, a Gibbs sampler is presented for simulating the ancestral sequences and their alignments. The updating step consists in updating the ancestral sequence and its three alignments with...

Bibliografske podrobnosti
Main Authors:	Jensen, J, Hein, J
Format:	Journal article
Jezik:	English
Izdano:	2005

Podobne knjige/članki

Antithetic Methods for Gibbs Samplers
od: Holmes, C, et al.
Izdano: (2009)

Programmable Quantum Annealers as Noisy Gibbs Samplers
od: Marc Vuffray, et al.
Izdano: (2022-04-01)

A CMB Gibbs sampler for localized secondary anisotropies
od: Bull, P, et al.
Izdano: (2014)

Estimating CDMs Using the Slice-Within-Gibbs Sampler
od: Xin Xu, et al.
Izdano: (2020-09-01)

A Gibbs Sampler for Phrasal Synchronous Grammar Induction
od: Blunsom, P, et al.
Izdano: (2009)

A Gibbs Sampler for Phrasal Synchronous Grammar Induction.
od: Blunsom, P, et al.
Izdano: (2009)

Gibbs sampler approval to biomedical data problem analysis
od: Chin, Siew Hoo.
Izdano: (2008)

Bayesian analysis of the linear regression constraints by Gibbs sampler
od: Younis Hazim Ismail
Izdano: (2010-06-01)

Improved techniques for sampling complex pedigrees with the Gibbs sampler
od: Fernando Rohan L, et al.
Izdano: (2007-01-01)

Recursions for statistical multiple alignment.
od: Hein, J, et al.
Izdano: (2003)

An exact auxiliary variable Gibbs sampler for a class of diffusions
od: Wang, Q, et al.
Izdano: (2020)

On Bayesian Estimation in Mixed Linear Models Using the Gibbs Sampler
Izdano: (2008-06-01)

Empirical Statistical Power for Testing Multilocus Genotypic Effects under Unbalanced Designs Using a Gibbs Sampler
od: Chaeyoung Lee
Izdano: (2012-11-01)

MALA-within-Gibbs Samplers for High-Dimensional Distributions with Sparse Conditional Structure
od: Tong, XT, et al.
Izdano: (2021)

Fragmentation of young massive clusters in binary components: an application of Griddy Gibbs Sampler
od: Abisa Sinha Adhikary, et al.
Izdano: (2025-03-01)

A navigation satellite selection algorithm for optimized positioning based on Gibbs sampler
od: Na Xia, et al.
Izdano: (2020-06-01)

Fiducial Inference on the Right Censored Birnbaum–Saunders Data via Gibbs Sampler
od: Kalanka P. Jayalath
Izdano: (2021-05-01)

Non-parametric MCMC Gibbs sampler approach and misclassification assessment of estimating haplotype frequencies among related statistical approaches
od: Gie Ken-Dror
Izdano: (2022-10-01)

Analytic convergence rates and parameterisation issues for the Gibbs sampler applied to state space models
od: Pitt, M, et al.
Izdano: (1999)

Analytic convergence rates and parameterisation issues for the Gibbs sampler applied to state space models.
od: Pitt, M, et al.
Izdano: (1996)

Position Weight Matrix, Gibbs Sampler, and the Associated Significance Tests in Motif Characterization and Prediction
od: Xuhua Xia
Izdano: (2012-01-01)

An Introduction to the DA-T Gibbs Sampler for the Two-Parameter Logistic (2PL) Model and Beyond
od: Gunter Maris, et al.
Izdano: (2005-01-01)

Single-channel blind separation of co-frequency modulated signals based on Gibbs sampler
od: Yong YANG, et al.
Izdano: (2015-04-01)

Single-channel blind separation of co-frequency modulated signals based on Gibbs sampler
od: Yong YANG, et al.
Izdano: (2015-04-01)

Markov chain Monte Carlo Gibbs sampler approach for estimating haplotype frequencies among multiple malaria infected human blood samples
od: Gie Ken-Dror, et al.
Izdano: (2021-07-01)

GSimp: A Gibbs sampler based left-censored missing value imputation approach for metabolomics studies.
od: Runmin Wei, et al.
Izdano: (2018-01-01)

Tracing spinning reserve inadequacy risk via hybrid importance sampling with an optimised partially collapsed Gibbs sampler
od: Yue Wang
Izdano: (2021-08-01)

Estimação de parâmetros genéticos em suínos usando Amostrador de Gibbs Estimation of genetic parameters for growth and backfat thickness of Large White pigs using the Gibbs Sampler
od: Leandro Barbosa, et al.
Izdano: (2008-07-01)

Entropic Dynamics on Gibbs Statistical Manifolds
od: Pedro Pessoa, et al.
Izdano: (2021-04-01)

Volumetric Next Best View by 3D Occupancy Mapping Using Markov Chain Gibbs Sampler for Precise Manufacturing
od: Lei Hou, et al.
Izdano: (2019-01-01)

GBNet: Deciphering regulatory rules in the co-regulated genes using a Gibbs sampler enhanced Bayesian network approach
od: Wang Wei, et al.
Izdano: (2008-09-01)

An efficient algorithm for statistical multiple alignment on arbitrary phylogenetic trees.
od: Lunter, G, et al.
Izdano: (2003)

An algorithm for statistical alignment of sequences related by a binary tree.
od: Hein, J
Izdano: (2001)

Gibbs fragmentation trees
od: Mccullagh, P, et al.
Izdano: (2008)

Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques.
od: Satija, R, et al.
Izdano: (2010)

A simulation-based approach to statistical alignment
od: Levy Karin, E, et al.
Izdano: (2018)

The Gibbs paradox
od: Saunders, S
Izdano: (2018)

The Gibbs Paradox
od: Simon Saunders
Izdano: (2018-07-01)

Herded Gibbs Sampling
od: Bornn, L, et al.
Izdano: (2013)

Statistical equilibrium in quantum gravity: Gibbs states in group field theory
od: Isha Kotecha, et al.
Izdano: (2018-01-01)