Fast and accurate detection of Identical-By-Descent segment sharing in large genomic datasets

Fast and accurate detection of Identical-By-Descent segment sharing in large genomic datasets

<p>Identical-By-Descent (IBD) segments are a fundamental measure of ge- netic relatedness and IBD detection is of great interest in many applica- tions, including demographic inference and haplotype-based association. Algorithms that scale to large datasets (more than 10.000 diploid indi- vidu...

Fuld beskrivelse

Bibliografiske detaljer
Hovedforfatter:	Saada, J
Andre forfattere:	Palamara, P
Format:	Thesis
Sprog:	English
Udgivet:	2019
Fag:	Population genetics > Statistical methods

Lignende værker

Methods for large-scale genome-wide association studies
af: Kalantzis, G
Udgivet: (2022)

RaPID: ultra-fast, powerful, and accurate detection of segments identical by descent (IBD) in biobank-scale cohorts
af: Ardalan Naseri, et al.
Udgivet: (2019-07-01)

Scalable approaches to inference and analysis of genome-wide genealogies
af: Gunnarsson, ÁF
Udgivet: (2023)

Blocks identical by descent in the genomes of the indigenous population of Siberia demonstrate genetic links between populations
af: N. A. Kolesnikov, et al.
Udgivet: (2023-03-01)

Conflation of Short Identity-by-Descent Segments Bias Their Inferred Length Distribution
af: Charleston W. K. Chiang, et al.
Udgivet: (2016-05-01)

Genetic identification of a common collagen disease in Puerto Ricans via identity-by-descent mapping in a health system
af: Gillian Morven Belbin, et al.
Udgivet: (2017-09-01)

Current Developments in Detection of Identity-by-Descent Methods and Applications
af: Evan L. Sticca, et al.
Udgivet: (2021-09-01)

Rapid detection of identity-by-descent tracts for mega-scale datasets
af: Ruhollah Shemirani, et al.
Udgivet: (2021-06-01)

The detection, structure and uses of extended haplotype identity in population genetic data
af: Xifara, DK
Udgivet: (2014)

Statistical HLA type imputation from large and heterogeneous datasets
af: Dilthey, A
Udgivet: (2012)

Rare and low-frequency variants and predisposition to complex disease
af: Albers, P
Udgivet: (2017)

Bayesian and frequentist methods and analyses of genome-wide association studies
af: Vukcevic, D
Udgivet: (2009)

Mirror descent for high-dimensional statistical models
af: Wu, F
Udgivet: (2021)

A genome-wide scan for regions shared identical by descent in Hutterite MS families
af: Dyment, D, et al.
Udgivet: (2002)

Octofitter: Fast, Flexible, and Accurate Orbit Modeling to Detect Exoplanets
af: William Thompson, et al.
Udgivet: (2023-01-01)

Fast Line Segment Detection and Large Scene Airport Detection for PolSAR
af: Daochang Wang, et al.
Udgivet: (2022-11-01)

Leveraging Identity-by-Descent for Accurate Genotype Inference in Family Sequencing Data.
af: Bingshan Li, et al.
Udgivet: (2015-06-01)

Estimation of heritability from limited family data using genome-wide identity-by-descent sharing
af: Ødegård Jørgen, et al.
Udgivet: (2012-05-01)

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
af: Howie, B, et al.
Udgivet: (2009)

Evaluating mtDNA patterns of genetic isolation using a re-sampling procedure: A case study on Italian populations
af: Paolo Anagnostou, et al.
Udgivet: (2017-02-01)

Inferring dated genealogies from modern and ancient genomes
af: Wohns, AWL
Udgivet: (2021)

Comparison of two geo-evolutionary analysis methods using local and cross-border bovine breeds
af: Áxel Villalobos-Cortés, et al.
Udgivet: (2017-07-01)

Priors, population sizes, and power in genome-wide hypothesis tests
af: Jitong Cai, et al.
Udgivet: (2023-04-01)

Association of the Lactase Persistence Haplotype Block With Disease Risk in Populations of European Descent
af: Shannon E. K. Joslin, et al.
Udgivet: (2020-10-01)

Precision of methods for calculating identity-by-descent matrices using multiple markers
af: Sørensen Anders, et al.
Udgivet: (2002-09-01)

Assumption-free estimation of heritability from genome-wide identity-by-descent sharing between full siblings.
Udgivet: (2006-03-01)

Assumption-free estimation of heritability from genome-wide identity-by-descent sharing between full siblings.
af: Peter M Visscher, et al.
Udgivet: (2006-03-01)

Theories of population variation in genes and genomes /
af: 426765 Christiansen, Freddy Bugge
Udgivet: (2008)

Detection of identity by descent using next-generation whole genome sequencing data
af: Su Shu-Yi, et al.
Udgivet: (2012-06-01)

New Software for the Fast Estimation of Population Recombination Rates (FastEPRR) in the Genomic Era
af: Feng Gao, et al.
Udgivet: (2016-06-01)

Correspondence Between Genomic- and Genealogical/Coalescent-Based Inference of Homozygosity by Descent in Large French-Canadian Genealogies
af: Kelly M. Burkett, et al.
Udgivet: (2022-01-01)

Genetic substructure and admixture of Mongolians and Kazakhs inferred from genome-wide array genotyping
af: Jing Zhao, et al.
Udgivet: (2020-11-01)

Categories of descent groups in a timor village/
af: Cunningham, Clark E.

A first stage genome-wide screen for regions shared identical-by-descent in Hutterite families with multiple sclerosis.
af: Dyment, D, et al.
Udgivet: (2008)

CATE: A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data
af: Deshan Perera, et al.
Udgivet: (2023-08-01)

Graphics of large datasets : visualizing a million /
af: 321851 Unwin, Antony, et al.
Udgivet: (2006)

Even Modest Prediction Accuracy of Genomic Models Can Have Large Clinical Utility
af: Emily Jane Dhurandhar, et al.
Udgivet: (2014-11-01)

A simple and rapid method for calculating identity-by-descent matrices using multiple markers
af: Woolliams John, et al.
Udgivet: (2001-09-01)

Maintenance of Complex Trait Variation: Classic Theory and Modern Data
af: Evan M. Koch, et al.
Udgivet: (2021-11-01)

Genomic Insight Into the Population Admixture History of Tungusic-Speaking Manchu People in Northeast China
af: Xianpeng Zhang, et al.
Udgivet: (2021-09-01)