Protein sequence information encodes more than the global minimum structure

Protein sequence information encodes more than the global minimum structure

<p>Allostery is a conformational or activity change of a protein’s active site resulting from a binding event at a distant, allosteric, site. The signal transmission is hypothesised to travel via allosteric networks and knowledge about the exact residues that transmit the signal would be benef...

Fuld beskrivelse

Bibliografiske detaljer
Hovedforfatter:	Schwarz, D
Andre forfattere:	Deane, C
Format:	Thesis
Sprog:	English
Udgivet:	2021
Fag:	Computational biology Protein structure prediction Structural bioinformatics

Lignende værker

Improving biologically inspired protein structure prediction using satisfied predicted contacts
af: Depner, L
Udgivet: (2018)

Biologically inspired de novo protein structure prediction
af: de Oliveira, S, et al.
Udgivet: (2015)

Protein structure prediction : concepts and applications /
af: 237140 Tramontano, Anna
Udgivet: (2006)

In silico characterisation of antigen receptor binding site structures
af: Wong, WK
Udgivet: (2020)

Novel applications for hierarchical natural move Monte Carlo simulations: from proteins to nucleic acids
af: Demharter, S
Udgivet: (2016)

Computational studies of protein sequence and structure
af: Hung, R
Udgivet: (1999)

Antibody structure prediction using deep learning
af: Abanades, B
Udgivet: (2023)

Structural and bioinformatic analysis of ADP-ribosylation, transcription, and splicing
af: Henfrey, CA
Udgivet: (2023)

Protein secondary structure prediction using a small training set (compact model) combined with a Complex-valued neural network approach
af: Rashid, Shamima, et al.
Udgivet: (2016)

Expression of an inverted repeat of a target gene leads to specific disappearance of the corresponding mRNA and encoded protein.
af: Bastin, P, et al.
Udgivet: (1999)

Fourier-based classification of protein secondary structures
af: Shu, Jian-Jun, et al.
Udgivet: (2017)

Communication: Capturing protein multiscale thermal fluctuations
af: Opron, Kristopher, et al.
Udgivet: (2016)

Structural studies of the type three secretion system export apparatus
af: Kuhlen, L
Udgivet: (2019)

Absolute binding enthalpy calculations using molecular dynamics simulations
af: Çınaroğlu, SS
Udgivet: (2023)

Protein fold evolution on completed genomes: distinguishing between young and old folds
af: Abeln, S, et al.
Udgivet: (2007)

PROTREC: a probability-based approach for recovering missing proteins based on biological networks
af: Kong, Weijia, et al.
Udgivet: (2022)

Characterizing Protein Conformation Space
af: Nigham, Anshul, et al.
Udgivet: (2007)

Radiation damage in protein crystallography: susceptibility study
af: Gerstel, M
Udgivet: (2014)

Structural studies of pestivirus envelope glycoproteins
af: Aitkenhead, H
Udgivet: (2021)

Protein folding
af: Cohen, F
Udgivet: (1980)

Precipitation pattern as a proxy for protein crystallization
af: Ng, J
Udgivet: (2015)

Exploring protein folding mechanisms to enable the protein structure prediction of previously intractable targets
af: West, C
Udgivet: (2019)

Structure and function of membrane proteins important in synaptic signalling
af: Li, A
Udgivet: (2024)

Protein–protein interactions modulate the docking-dependent E3-ubiquitin ligase activity of Carboxy-terminus of Hsc70-interacting protein (CHIP)
af: Narayan, Vikram, et al.
Udgivet: (2018)

Bioinformatic analyses of metallome and structural analysis of sirtuin from Glaciozyma antarctica PII2
af: Foong, Pik Mun
Udgivet: (2014)

Computational methods for protein structure prediction and modeling /
af: Xu, Ying, 1960-, et al.
Udgivet: (2007)

Protein loop structure prediction
af: Choi, Y
Udgivet: (2011)

Cellular and structural dynamics of the intracellular trafficking receptor KDELR
af: Frey, DM
Udgivet: (2025)

Scaffolding low quality genomes using orthologous protein sequences.
af: Li, Y, et al.
Udgivet: (2013)

Protein-protein interactions prediction via multimodal deep polynomial network and regularized extreme learning machine
af: Lei, Haijun, et al.
Udgivet: (2020)

Multiple sequence analysis in the presence of alignment uncertainty
af: Herman, J, et al.
Udgivet: (2014)

Role of mutual information for predicting contact residues in proteins
af: Gomes, M
Udgivet: (2012)

Fold recognition and alignment in the ‘twilight zone’
af: Hill, J, et al.
Udgivet: (2013)

Exploring the fold space preferences of ancient and newborn protein superfamilies
af: Edwards, H, et al.
Udgivet: (2014)

Computational identification of vesicular transport proteins from sequences using deep gated recurrent units architecture
af: Le, Nguyen Quoc Khanh, et al.
Udgivet: (2020)

Comparison and evaluation of multiple sequence alignment tools in bininformatics
af: Sedaghatinia, Asieh, et al.
Udgivet: (2009)

Why breast cancer signatures are no better than random signatures explained
af: Goh, Wilson Wen Bin, et al.
Udgivet: (2020)

Structural studies of the Type IX secretion system inner membrane complex
af: Hennell James, R
Udgivet: (2021)

Structural and biochemical characterisation of human integral membrane proteins regarded as potential therapeutic targets
af: da Costa Cabral Gomes Páscoa, T
Udgivet: (2022)

Building the Drosophila centriole: a structural investigation of the centriolar Proteins SAS-6, SAS-4 and Ana2
af: Cottee, M
Udgivet: (2014)