Emergence of fractal geometries in the evolution of a metabolic enzyme

Fractals are patterns that are self-similar across multiple length-scales. Macroscopic fractals are common in nature; however, so far, molecular assembly into fractals is restricted to synthetic systems. Here we report the discovery of a natural protein, citrate synthase from the cyanobacterium Syne...

Full description

Bibliographic Details
Main Authors: Sendker, FL, Kei Lo, Y, Heimerl, T, Bohn, S, Persson, LJ, Mais, C-N, Sadowska, W, Paczina, N, Nußbaum, E, Del Carmen Sanchez Olmos, M, Forchhammer, K, Schindler, D, Erb, TJ, Benesch, JLP, Marklund, EG, Bange, G, Schuller, JM, Hochberg, GKA
Format: Journal article
Language:English
Published: Springer Nature 2024
Description
Summary:Fractals are patterns that are self-similar across multiple length-scales. Macroscopic fractals are common in nature; however, so far, molecular assembly into fractals is restricted to synthetic systems. Here we report the discovery of a natural protein, citrate synthase from the cyanobacterium Synechococcus elongatus, which self-assembles into Sierpiński triangles. Using cryo-electron microscopy, we reveal how the fractal assembles from a hexameric building block. Although different stimuli modulate the formation of fractal complexes and these complexes can regulate the enzymatic activity of citrate synthase in vitro, the fractal may not serve a physiological function in vivo. We use ancestral sequence reconstruction to retrace how the citrate synthase fractal evolved from non-fractal precursors, and the results suggest it may have emerged as a harmless evolutionary accident. Our findings expand the space of possible protein complexes and demonstrate that intricate and regulatable assemblies can evolve in a single substitution.