Joint modelling of diffusion MRI and microscopy

Joint modelling of diffusion MRI and microscopy

The combination of diffusion MRI with microscopy provides unique opportunities to study microstructural features of tissue, particularly when acquired in the same sample. Microscopy is frequently used to validate diffusion MRI microstructure models, addressing the indirect nature of dMRI signals. Ty...

Disgrifiad llawn

Manylion Llyfryddiaeth
Prif Awduron:	Howard, A, Mollink, J, Kleinnijenhuis, M, Pallebage-Gamarallage, M, Bastiani, M, Cottaar, M, Miller, K, Jbabdi, S
Fformat:	Journal article
Cyhoeddwyd:	Elsevier 2019

Eitemau Tebyg

Diffusion MRI fibre orientation dispersion estimates evaluated with polarized light imaging and histological analysis
gan: Mollink, J, et al.
Cyhoeddwyd: (2017)

Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging.
gan: Mollink, J, et al.
Cyhoeddwyd: (2017)

An open resource combining multi-contrast MRI and microscopy in the macaque brain
gan: Howard, AFD, et al.
Cyhoeddwyd: (2023)

An automated pipeline for extracting histological stain area fraction for voxelwise quantitative MRI-histology comparisons
gan: Kor, DZL, et al.
Cyhoeddwyd: (2022)

Choice of reference measurements affects quantification of long diffusion time behaviour using stimulated echoes
gan: Kleinnijenhuis, M, et al.
Cyhoeddwyd: (2017)

Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction
gan: Bastiani, M, et al.
Cyhoeddwyd: (2018)

Estimating axial diffusivity in the NODDI model
gan: Howard, AF, et al.
Cyhoeddwyd: (2022)

An open resource combining multi-contrast MRI and microscopy in the macaque brain
gan: Amy F. D. Howard, et al.
Cyhoeddwyd: (2023-07-01)

Dissecting the pathobiology of altered MRI signal in amyotrophic lateral sclerosis: A post mortem whole brain sampling strategy for the integration of ultra-high-field MRI and quantitative neuropathology
gan: Pallebage-Gamarallage, M, et al.
Cyhoeddwyd: (2018)

Modelling an equivalent b-value in diffusion-weighted steady-state free precession
gan: Tendler, B, et al.
Cyhoeddwyd: (2020)

Microstructure imaging with diffusion MRI and microscopy
gan: Howard, A
Cyhoeddwyd: (2020)

Dentatorubrothalamic tract localization with postmortem MR diffusion tractography compared to histological 3D reconstruction.
gan: Mollink, J, et al.
Cyhoeddwyd: (2015)

An automated pipeline for extracting histological stain area fraction for voxelwise quantitative MRI-histology comparisons
gan: Daniel Z.L. Kor, et al.
Cyhoeddwyd: (2022-12-01)

Estimating axial diffusivity in the NODDI model
gan: Amy FD Howard, et al.
Cyhoeddwyd: (2022-11-01)

Identifying microstructural changes in diffusion MRI; How to circumvent parameter degeneracy
gan: Hossein Rafipoor, et al.
Cyhoeddwyd: (2022-10-01)

Quantifying myelin in crossing fibers using diffusion-prepared phase imaging: theory and simulations
gan: Cottaar, M, et al.
Cyhoeddwyd: (2021)

White matter changes in the perforant path area in patients with amyotrophic lateral sclerosis
gan: Mollink, J, et al.
Cyhoeddwyd: (2019)

Modelling fibre fanning in diffusion-weighted MRI.
gan: Sotiropoulos, SN, et al.
Cyhoeddwyd: (2012)

Diffusion tensor characteristics of gyrencephaly using high resolution diffusion MRI in vivo at 7T.
gan: Kleinnijenhuis, M, et al.
Cyhoeddwyd: (2015)

Modelling white matter in gyral blades as a continuous vector field
gan: Cottaar, M, et al.
Cyhoeddwyd: (2020)

Dissecting the pathobiology of altered MRI signal in amyotrophic lateral sclerosis: A post mortem whole brain sampling strategy for the integration of ultra-high-field MRI and quantitative neuropathology
gan: Menuka Pallebage-Gamarallage, et al.
Cyhoeddwyd: (2018-03-01)

Methods for quantitative susceptibility and R2* mapping in whole post-mortem brains at 7T applied to amyotrophic lateral sclerosis
gan: Wang, C, et al.
Cyhoeddwyd: (2020)

Functional and diffusion MRI reveal the neurophysiological basis of neonates’ noxious-stimulus evoked brain activity
gan: Baxter, L, et al.
Cyhoeddwyd: (2021)

The spatial correspondence and genetic influence of interhemispheric connectivity with white matter microstructure
gan: Mollink, J, et al.
Cyhoeddwyd: (2019)

The spatial correspondence and genetic influence of interhemispheric connectivity with white matter microstructure
gan: Mollink, J, et al.
Cyhoeddwyd: (2019)

Tensor image registration library: Deformable registration of stand‐alone histology images to whole‐brain post‐mortem MRI data
gan: Istvan N. Huszar, et al.
Cyhoeddwyd: (2023-01-01)

A gyral coordinate system predictive of fibre orientations
gan: Cottaar, M, et al.
Cyhoeddwyd: (2018)

Use of multi-flip angle measurements to account for transmit inhomogeneity and non-Gaussian diffusion in DW-SSFP.
gan: Tendler, BC, et al.
Cyhoeddwyd: (2020)

Improved fibre dispersion estimation using b-tensor encoding
gan: Cottaar, M, et al.
Cyhoeddwyd: (2020)

Improved tractography using asymmetric fibre orientation distributions
gan: Bastiani, M, et al.
Cyhoeddwyd: (2017)

Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project
gan: Bastiani, M, et al.
Cyhoeddwyd: (2018)

Cross-Subject Comparison of Local Diffusion MRI Parameters
gan: Smith, S, et al.
Cyhoeddwyd: (2013)

Connectivity-based segmentation of the periaqueductal gray matter in human with brainstem optimized diffusion MRI.
gan: Ezra, M, et al.
Cyhoeddwyd: (2014)

Structure Tensor Informed Fiber Tractography (STIFT) by combining gradient echo MRI and diffusion weighted imaging.
gan: Kleinnijenhuis, M, et al.
Cyhoeddwyd: (2012)

A method to remove the influence of fixative concentration on postmortem T2 maps using a kinetic tensor model
gan: Tendler, BC, et al.
Cyhoeddwyd: (2021)

RubiX: combining spatial resolutions for Bayesian inference of crossing fibers in diffusion MRI.
gan: Sotiropoulos, SN, et al.
Cyhoeddwyd: (2013)

Ball and rackets: Inferring fiber fanning from diffusion-weighted MRI.
gan: Sotiropoulos, SN, et al.
Cyhoeddwyd: (2012)

Human cortical connectome reconstruction from diffusion weighted MRI: the effect of tractography algorithm.
gan: Bastiani, M, et al.
Cyhoeddwyd: (2012)

Functional and diffusion MRI reveal the neurophysiological basis of neonates’ noxious-stimulus evoked brain activity
gan: Luke Baxter, et al.
Cyhoeddwyd: (2021-05-01)

Using GPUs to accelerate computational diffusion MRI: From microstructure estimation to tractography and connectomes
gan: Hernandez-Fernandez, M, et al.
Cyhoeddwyd: (2018)