Joint modelling of diffusion MRI and microscopy

Joint modelling of diffusion MRI and microscopy

The combination of diffusion MRI with microscopy provides unique opportunities to study microstructural features of tissue, particularly when acquired in the same sample. Microscopy is frequently used to validate diffusion MRI microstructure models, addressing the indirect nature of dMRI signals. Ty...

Deskribapen osoa

Xehetasun bibliografikoak
Egile Nagusiak:	Howard, A, Mollink, J, Kleinnijenhuis, M, Pallebage-Gamarallage, M, Bastiani, M, Cottaar, M, Miller, K, Jbabdi, S
Formatua:	Journal article
Argitaratua:	Elsevier 2019

Antzeko izenburuak

Diffusion MRI fibre orientation dispersion estimates evaluated with polarized light imaging and histological analysis
nork: Mollink, J, et al.
Argitaratua: (2017)

Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging.
nork: Mollink, J, et al.
Argitaratua: (2017)

An open resource combining multi-contrast MRI and microscopy in the macaque brain
nork: Howard, AFD, et al.
Argitaratua: (2023)

An automated pipeline for extracting histological stain area fraction for voxelwise quantitative MRI-histology comparisons
nork: Kor, DZL, et al.
Argitaratua: (2022)

Choice of reference measurements affects quantification of long diffusion time behaviour using stimulated echoes
nork: Kleinnijenhuis, M, et al.
Argitaratua: (2017)

Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction
nork: Bastiani, M, et al.
Argitaratua: (2018)

Estimating axial diffusivity in the NODDI model
nork: Howard, AF, et al.
Argitaratua: (2022)

An open resource combining multi-contrast MRI and microscopy in the macaque brain
nork: Amy F. D. Howard, et al.
Argitaratua: (2023-07-01)

Dissecting the pathobiology of altered MRI signal in amyotrophic lateral sclerosis: A post mortem whole brain sampling strategy for the integration of ultra-high-field MRI and quantitative neuropathology
nork: Pallebage-Gamarallage, M, et al.
Argitaratua: (2018)

Modelling an equivalent b-value in diffusion-weighted steady-state free precession
nork: Tendler, B, et al.
Argitaratua: (2020)

Microstructure imaging with diffusion MRI and microscopy
nork: Howard, A
Argitaratua: (2020)

Dentatorubrothalamic tract localization with postmortem MR diffusion tractography compared to histological 3D reconstruction.
nork: Mollink, J, et al.
Argitaratua: (2015)

An automated pipeline for extracting histological stain area fraction for voxelwise quantitative MRI-histology comparisons
nork: Daniel Z.L. Kor, et al.
Argitaratua: (2022-12-01)

Estimating axial diffusivity in the NODDI model
nork: Amy FD Howard, et al.
Argitaratua: (2022-11-01)

Identifying microstructural changes in diffusion MRI; How to circumvent parameter degeneracy
nork: Hossein Rafipoor, et al.
Argitaratua: (2022-10-01)

Quantifying myelin in crossing fibers using diffusion-prepared phase imaging: theory and simulations
nork: Cottaar, M, et al.
Argitaratua: (2021)

White matter changes in the perforant path area in patients with amyotrophic lateral sclerosis
nork: Mollink, J, et al.
Argitaratua: (2019)

Modelling fibre fanning in diffusion-weighted MRI.
nork: Sotiropoulos, SN, et al.
Argitaratua: (2012)

Diffusion tensor characteristics of gyrencephaly using high resolution diffusion MRI in vivo at 7T.
nork: Kleinnijenhuis, M, et al.
Argitaratua: (2015)

Modelling white matter in gyral blades as a continuous vector field
nork: Cottaar, M, et al.
Argitaratua: (2020)

Dissecting the pathobiology of altered MRI signal in amyotrophic lateral sclerosis: A post mortem whole brain sampling strategy for the integration of ultra-high-field MRI and quantitative neuropathology
nork: Menuka Pallebage-Gamarallage, et al.
Argitaratua: (2018-03-01)

Methods for quantitative susceptibility and R2* mapping in whole post-mortem brains at 7T applied to amyotrophic lateral sclerosis
nork: Wang, C, et al.
Argitaratua: (2020)

Functional and diffusion MRI reveal the neurophysiological basis of neonates’ noxious-stimulus evoked brain activity
nork: Baxter, L, et al.
Argitaratua: (2021)

The spatial correspondence and genetic influence of interhemispheric connectivity with white matter microstructure
nork: Mollink, J, et al.
Argitaratua: (2019)

The spatial correspondence and genetic influence of interhemispheric connectivity with white matter microstructure
nork: Mollink, J, et al.
Argitaratua: (2019)

Tensor image registration library: Deformable registration of stand‐alone histology images to whole‐brain post‐mortem MRI data
nork: Istvan N. Huszar, et al.
Argitaratua: (2023-01-01)

A gyral coordinate system predictive of fibre orientations
nork: Cottaar, M, et al.
Argitaratua: (2018)

Use of multi-flip angle measurements to account for transmit inhomogeneity and non-Gaussian diffusion in DW-SSFP.
nork: Tendler, BC, et al.
Argitaratua: (2020)

Improved fibre dispersion estimation using b-tensor encoding
nork: Cottaar, M, et al.
Argitaratua: (2020)

Improved tractography using asymmetric fibre orientation distributions
nork: Bastiani, M, et al.
Argitaratua: (2017)

Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project
nork: Bastiani, M, et al.
Argitaratua: (2018)

Cross-Subject Comparison of Local Diffusion MRI Parameters
nork: Smith, S, et al.
Argitaratua: (2013)

Connectivity-based segmentation of the periaqueductal gray matter in human with brainstem optimized diffusion MRI.
nork: Ezra, M, et al.
Argitaratua: (2014)

Structure Tensor Informed Fiber Tractography (STIFT) by combining gradient echo MRI and diffusion weighted imaging.
nork: Kleinnijenhuis, M, et al.
Argitaratua: (2012)

A method to remove the influence of fixative concentration on postmortem T2 maps using a kinetic tensor model
nork: Tendler, BC, et al.
Argitaratua: (2021)

RubiX: combining spatial resolutions for Bayesian inference of crossing fibers in diffusion MRI.
nork: Sotiropoulos, SN, et al.
Argitaratua: (2013)

Ball and rackets: Inferring fiber fanning from diffusion-weighted MRI.
nork: Sotiropoulos, SN, et al.
Argitaratua: (2012)

Human cortical connectome reconstruction from diffusion weighted MRI: the effect of tractography algorithm.
nork: Bastiani, M, et al.
Argitaratua: (2012)

Functional and diffusion MRI reveal the neurophysiological basis of neonates’ noxious-stimulus evoked brain activity
nork: Luke Baxter, et al.
Argitaratua: (2021-05-01)

Using GPUs to accelerate computational diffusion MRI: From microstructure estimation to tractography and connectomes
nork: Hernandez-Fernandez, M, et al.
Argitaratua: (2018)