Comparative molecular dynamics--similar folds and similar motions?

Comparative molecular dynamics--similar folds and similar motions?

Proteins possessing the same fold may undergo similar motions, particularly if these motions involve large conformational transitions. The increasing amounts of structural data provide a useful starting point with which to test this hypothesis. We have performed a total of 0.29 micros of molecular d...

Полное описание

Библиографические подробности
Главные авторы:	Pang, A, Arinaminpathy, Y, Sansom, MS, Biggin, P
Формат:	Journal article
Язык:	English
Опубликовано:	2005

Схожие документы

Interdomain dynamics and ligand binding: molecular dynamics simulations of glutamine binding protein.
по: Pang, A, и др.
Опубликовано: (2003)

Molecular dynamics simulations of the ligand-binding domain of the ionotropic glutamate receptor GluR2.
по: Arinaminpathy, Y, и др.
Опубликовано: (2002)

Comparative molecular dynamics simulations: Glutamate receptors and periplasmic binding proteins
по: Sansom, M, и др.
Опубликовано: (2004)

A prokaryotic glutamate receptor: homology modelling and molecular dynamics simulations of GluR0.
по: Arinaminpathy, Y, и др.
Опубликовано: (2003)

Binding site flexibility: molecular simulation of partial and full agonists within a glutamate receptor.
по: Arinaminpathy, Y, и др.
Опубликовано: (2006)

Protein Similarity Derived Solely from Molecular Dynamics
по: Biggin, P, и др.
Опубликовано: (2010)

Binding site flexibility: Molecular simulation of partial and full agonists within a glutamate receptor
по: Arinaminpathy, Y, и др.
Опубликовано: (2006)

Conformational dynamics of glutamate receptors: MD simulations of the ligand-binding domains of GluR2 and GluR0
по: Arinaminpathy, Y, и др.
Опубликовано: (2004)

Quantifying the similarities within fold space.
по: Harrison, A, и др.
Опубликовано: (2002)

Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity.
по: Münz, M, и др.
Опубликовано: (2010)

Design and Manufacture of Similar Model of Folding Wings and Study on Dynamic Characteristics
по: Xinqiang Lu, и др.
Опубликовано: (2022-12-01)

Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity
по: Lyngsø Rune, и др.
Опубликовано: (2010-04-01)

Molecular dynamics simulations of the ligand-binding domain of an N-methyl-D-aspartate receptor.
по: Kaye, S, и др.
Опубликовано: (2006)

Molecular dynamics studies of AChBP with nicotine and carbamylcholine: the role of water in the binding pocket.
по: Amiri, S, и др.
Опубликовано: (2007)

Homology modelling and molecular dynamics simulations of a prokaryotic glutamate receptor: GluR0
по: Arinaminpathy, Y, и др.
Опубликовано: (2002)

The Measure of Motion Similarity for Robotics Application
по: Teresa Zielinska, и др.
Опубликовано: (2023-02-01)

Similar Structures to the E-to-H Helix Unit in the Globin-Like Fold are Found in Other Helical Folds
по: Masanari Matsuoka, и др.
Опубликовано: (2014-02-01)

SimilarNet: Pairwise Similarity Comparator Layer for Versatile Comparison
по: Chungheon Yi, и др.
Опубликовано: (2023-01-01)

Finding similar motion across video sequences
по: Sim, Si Jia.
Опубликовано: (2010)

Self-similarity in the equation of motion of a ship
по: Gyeong Joong Lee
Опубликовано: (2014-06-01)

Self-similarity in the equation of motion of a ship
по: Lee Gyeong Joong
Опубликовано: (2014-06-01)

How similar is "similar," or what is the best measure of soil spectral and physiochemical similarity?
по: R Zeng, и др.
Опубликовано: (2021-01-01)

Dynamical comparison between Drosha and Dicer reveals functional motion similarities and dissimilarities.
по: Rotem Aharoni, и др.
Опубликовано: (2019-01-01)

Potassium and sodium ions in a potassium channel studied by molecular dynamics simulations.
по: Biggin, P, и др.
Опубликовано: (2001)

Foundations of molecular similarity analysis
по: Bajorath Jürgen
Опубликовано: (2008-03-01)

Multi-scale structural similarity index for motion detection
по: M. Abdel-Salam Nasr, и др.
Опубликовано: (2017-07-01)

On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?
по: Lupas, A, и др.
Опубликовано: (2001)

Membrane protein structure quality in molecular dynamics simulation.
по: Law, R, и др.
Опубликовано: (2005)

Methods of determining indicators of similarity of 3D motion
по: Piotr Flisiak, и др.
Опубликовано: (2020-03-01)

Sialidase-like Asp-boxes: sequence-similar structures within different protein folds.
по: Copley, R, и др.
Опубликовано: (2001)

Molecular similarity: Theory, applications, and perspectives
по: Kenneth López-Pérez, и др.
Опубликовано: (2024-12-01)

Molecular study of similar Biomphalaria species
по: Linus Spatz, и др.
Опубликовано: (1998-01-01)

Analysis and comparison of molecular similarity measures /
по: Naomie Salim 612144
Опубликовано: (2002)

Statistical Measures to Quantify Similarity between Molecular Dynamics Simulation Trajectories
по: Jenny Farmer, и др.
Опубликовано: (2017-11-01)

Non-equilibrium molecular dynamics study of KcsA gating
по: Biggin, P, и др.
Опубликовано: (2001)

In-Law Preferences for Similarity: Comparing Parent and Child Preferences for In-Law/Intimate Partner Similarity
по: Yan Wang, и др.
Опубликовано: (2024-01-01)

Chemical similarity searching of structural database :comparing the effectiveness of similarity coefficients and structural descriptors /
по: 466612 Chay, Siao Her, и др.
Опубликовано: (2007)

Supramolecular Similarity in Polymorphs: Use of Similarity Indices (IX)
по: Paulo R. S. Salbego, и др.
Опубликовано: (2019-06-01)

Similarity of structures based on matrix similarity
по: Ivica Kožar, и др.
Опубликовано: (2017-01-01)

Similarity, self-similarity, and intermediate asymptotics/
по: 233862 Barenblatt, G. I.
Опубликовано: (1979)