Efficient ancestry and mutation simulation with msprime 1.0

Efficient ancestry and mutation simulation with msprime 1.0

Stochastic simulation is a key tool in population genetics, since the models involved are often analytically intractable and simulation is usually the only way of obtaining ground-truth data to evaluate inferences. Because of this, a large number of specialized simulation programs have been develope...

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Bibliografiske detaljer
Main Authors:	Baumdicker, F, Bisschop, G, Goldstein, D, Zhu, S, Jeffery, B, Wohns, AW, Wong, Y, Kelleher, J
Format:	Journal article
Sprog:	English
Udgivet:	Oxford University Press 2021

Lignende værker

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af: Tagami, D, et al.
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af: Jie Liu, et al.
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af: Kelleher, J, et al.
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af: Klara Elisabeth Burger, et al.
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af: Ana P Estrada-Flórez, et al.
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af: Hannah Brunsdon, et al.
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af: Iain Mathieson, et al.
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af: Thomas Brüls, et al.
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af: Rodrigo Díaz Olmos, et al.

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af: Nikolay Daskalov; Yarmila Daskalova
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af: Ignacio Martínez, et al.
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The common ancestry of life
af: Wolf Yuri I, et al.
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Surnames and ancestry in Brazil.
af: Leonardo Monasterio
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af: V. Lehsten, et al.
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af: Connor Thomas R, et al.
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af: Qidi Feng, et al.
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af: Khalaf Bushara, et al.
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af: Pradiptajati Kusuma, et al.
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af: Jessica Roelands, et al.
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af: Meghana S. Pagadala, et al.
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af: Rui Pereira, et al.
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af: D. Truelsen, et al.
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Crinoid ancestry without blastozoans
af: Thomas E. Guensburg, et al.
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Inference of transposable element ancestry.
af: Aaron C Wacholder, et al.
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Peptide ancestry informative markers in uterine neoplasms from women of European, African, and Asian ancestry
af: Nicholas W. Bateman, et al.
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af: Price, A, et al.
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